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CAGTGCTTGGCTTATCAAAGGAGGAAGCAGAAAACAAACCTTATATAGCTTCAATGGGGATCTATATTTTTAAGAAAGACATACTCCTAAACCTTCTAAGgtatgtcaattcaacttactggagctcacagagtttcattaaaatatctatgtgattatccaggcaaaagggaattaggatcctccattttatgttcaaatattctattcagttaactgcacaattactcgtttaccttaagccggactatatcatcgttaggtcag
species | Zea mays |
transcript | GRMZM2G391936_T05 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCAATGGGGATCTATATTTTTAAGAAAGACATACTCCTAAACCTTCTAAG ATGGCGTTTTCCCACTGCAAATGATTTTGGTTCTGAAATAATTCCTGCTTCEST: gi|13126505|gb|BG317075.1|BG317075
genomic: TCAATGGGGATCTATATTTTTAAGAAAGACATACTCCTAAACCTTCTAAGgtatgtcaat ... gttaggtcagATGGCGTTTTCCCACTGCAAATGATTTTGGTTCTGAAATAATTCCTGCTTC
EST: TCAATGGGGATCTATATTTTTAAG-AAGACATACTCCTAAACCTTCTAAG ATGGCGTTTTCCCACTGCAAATGATTTTGGTTCTGAAATAATTCCTGCTTCEST: gi|211232745|gb|FL322840.1|FL322840
genomic: TCAATGGGGATCTATATTTTTAAGAAAGACATACTCCTAAACCTTCTAAGgtatgtcaat ... gttaggtcagATGGCGTTTTCCCACTGCAAATGATTTTGGTTCTGAAATAATTCCTGCTTC
EST: AAGAAAGACATACTCCTAAACCTTCTAAG ATGGCGTTTTCCCACTGCAAATGATTTTGGTTCTGAAATAATTCCTGCTTCEST: gi|32934981|gb|CF039793.1|CF039793
genomic: AAGAAAGACATACTCCTAAACCTTCTAAGgtatgtcaat ... gttaggtcagATGGCGTTTTCCCACTGCAAATGATTTTGGTTCTGAAATAATTCCTGCTTC
EST: TCAATGGGGATCTATATTTTTAAGAAAGACATACTCCTAAACCTTCTAAG ATGGCGTTTTCCCACTGCAAATGATTTTGGTTCTGAAATAATTCCTGCTTCEST: gi|31362917|gb|CD447274.1|CD447274
genomic: TCAATGGGGATCTATATTTTTAAGAAAGACATACTCCTAAACCTTCTAAGgtatgtcaat ... gttaggtcagATGGCGTTTTCCCACTGCAAATGATTTTGGTTCTGAAATAATTCCTGCTTC
EST: TCAATGGGGATCTATATTTTTAAGAAAGACATACTCCTAAACCTTCTAAG ATGGCGTTTTCCCACTGCAAATGATTTTGGTTCTGAAATAATTCCTGCTTC
genomic: TCAATGGGGATCTATATTTTTAAGAAAGACATACTCCTAAACCTTCTAAGgtatgtcaat ... gttaggtcagATGGCGTTTTCCCACTGCAAATGATTTTGGTTCTGAAATAATTCCTGCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGTGCTTGGCTTATCAAAGGAGGAAGCAGAAAACAAACCTTATATAGCTTCAATGGGGATCTATATTTTTAAGAAAGACATACTCCTAAACCTTCTAAGgtatgtcaattcaacttactggagctcacagagtttcattaaaatatctatgtgattatccaggcaaaagggaattaggatcctccattttatgttcaaatattctattcagttaactgcacaattactcgtttaccttaagccggactatatcatcgttaggtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA