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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAGAAGTTGGACTGTAAGAGATACTTGACCCCAAAGGATATCACTGAGGGATCTGCCAATCTAAATCTTGCATTTGTTGCACAAATATTCCAGCACAGgtaaacatggcttcctttgtttccataataccaaaaaagataaaacgtctaatatgtgaattatgtcgccaagtcatgtggtcaattttcacatgttcctccacatttacaattaaagcttaacagataaccagttatctaattcttgccttatgctgttcag

Basic information

species Zea mays
transcript GRMZM2G382341_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G382341_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g48740.1 (Oryza sativa), 5'ss of exon 9
CAGAGAAGTTGGACTGTAAGAGATACTTGACCCCAAAGGATATCACTGAGGGATCTGCCAATCTAAATCTTGCATTTGTTGCACAAATATTCCAGCACAGgtaaacatggcttcctttgtttccataataccaaaaaagataaaacgtctaatatgtgaattatgtcgccaagtcatgtggtcaattttcacatgttcctccacatttacaattaaagcttaacagataac---cagttatctaattcttgccttatgctgttcag-----------------------
||||||||||||| || || ||||||||||| || ||||||||||||||||| ||||||||| | |||||||||||||| |||||||||||||||||  |||||  |     |   |||||||       |||||     |||    |||  | | |  || ||   || |  | | ||    | ||| | |||||| |   | ||| ||  | |||| ||   || || |   || | |  |  |  |   ||||| |  || |                        
CAGAGAAGTTGGATTGCAAAAGATACTTGACTCCTAAGGATATCACTGAGGGTTCTGCCAATTTGAATCTTGCATTTGTGGCACAAATATTCCAGCATCGgtaagtagtatgtttcttgtttct------ccaaaggcattaacttttctttttttt--atcataaagctagctaaggt----attttccccatgttgcagtatattcactttaaaagtttcttagctagctgccaatgaattggtcatctgcttat-cacttgaatgctattgttccatgatgcacag

upper sequence: GRMZM2G382341_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA02G47800.1 (Glycine max), 5'ss of exon 9
CAGAGAAGTTGGACTGTAAGAGATACTTGACCCCAAAGGATATCACTGAGGGATCTGCCAATCTAAATCTTGCATTTGTTGCACAAATATTCCAGCACAGgtaaacatggcttcctttgtttccataataccaaaaaagataaaacgtctaatatgtgaattatgtcgccaa--gtcatgtggtcaattttcacatgttcctccacatttacaattaaagcttaacagataaccagttatctaattcttgccttatgctgttcag
||||||  || || || ||||||||| | || |||||||| ||    ||||| ||  | ||||| ||||||||||||||||| ||||| |||||||| |||||         |  || ||||  | |      |||      ||   | | || | | |||||||  |      | | |    | |||    |   ||    |  | | ||                                                      
CAGAGAGATTAGATTGCAAGAGATACCTCACTCCAAAGGACATAGTGGAGGGGTCACCTAATCTCAATCTTGCATTTGTTGCTCAAATTTTCCAGCATAGgta---------ttgttcgttttaagaggttgcaaatgtgctaatgatttcat-tataaattatgctgttttctgcccttctatgaatggggatgggtgtggct-cctata------------------------------------------------------

upper sequence: GRMZM2G382341_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA14G00820.1 (Glycine max), 5'ss of exon 8
CAGAGAAGTTGGACTGTAAGAGATACTTGACCCCAAAGGATATCACTGAGGGATCTGCCAATCTAAATCTTGCATTTGTTGCACAAATATTCCAGCACAGgtaaacatggcttcctttgtttccataataccaaaaaagataaaacgtctaatatgtgaattatgtcgccaagtcatgtggtcaattttcacatgttcctccacatttacaattaaagcttaacagataaccagttatctaattcttgccttatgctgttcag
||||||| || || || ||||||||| | || |||||||| ||    ||||| ||  | ||||| ||||||||||||||||| ||||| |||||||| ||||    |||| |   |||          |  ||||   | |||    | | || ||| ||||    |   |   ||    |    ||||   || | | ||||      |                                                     
CAGAGAAATTAGATTGCAAGAGATACCTCACTCCAAAGGACATAGTGGAGGGGTCACCTAATCTTAATCTTGCATTTGTTGCTCAAATTTTCCAGCATAGgt----atggttctttttaa----ggggttgcaaatgtgctaat-tatttcat-tgtaaattcatacaatataacaataagaatcttttgggatatgcttccaagaaccc-----------------------------------------------------

upper sequence: GRMZM2G382341_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv12s0059g00560.t01 (Vitis vinifera), 5'ss of exon 8
CAGAGAAGTTGGACTGTAAGAGATACTTGACCCCAAAGGATATCACTGAGGGATCTGCCAATCTAAATCTTGCATTTGTTGCACAAATATTCCAGCACAGgtaaacatggcttcctttgtttccataataccaaaaaagataa-aacgtctaatatgtgaattatgtcgccaagtcatgtggtcaattttcacatgttcctccacatttacaattaaagcttaacagataaccagttatctaattcttgccttatgctgttcag
||||||| ||||| || ||   |||  | || |||||||| ||   |||||| ||  | |||||||||||||||||||||||||| |||||||| ||||||| ||  |   | | ||  |||   | || |    | |  |   ||  | |   || | ||   ||   |    | |       |||  |   |   |                                                                  
CAGAGAAATTGGATTGCAAACAATATGTCACTCCAAAGGACATTGTTGAGGGCTCAACAAATCTAAATCTTGCATTTGTTGCACAGATATTCCATCACAGgtgaaattttgtcctttcatttattttatgcttgcagattttgtaatttttttcatcttaagactggtactggtttaaacaagtaatgctagaaaactaa----------------------------------------------------------------

upper sequence: GRMZM2G382341_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv19s0090g01440.t01 (Vitis vinifera), 5'ss of exon 8
CAGAGAAGTTGGACTGTAAGAGATACTTGACCCCAAAGGATATCACTGAGGGATCTGCCAATCTAAATCTTGCATTTGTTGCACAAATATTCCAGCACAGgtaa-acatggcttcctttgtttccataataccaaaaaagataaaacgtctaatatgtgaattatgtcgccaagtcatgtggtcaattttcacatgttcctccacatttacaattaaagcttaacagataaccagttatctaattcttgccttatgctgttcag
||||||   ||||||| ||  |||||||||  |||||||| ||   ||| || ||  | ||| ||||||||||||||||||| ||||||||||| || ||||   | |||  |    |    |   | | |     | |  |   |     |||   |   |  | |  |      || |||    |  |  |||   |  | |                                                            
CAGAGAGAATGGACTGCAAACGATACTTGAGTCCAAAGGACATTGTTGAAGGCTCACCAAATTTAAATCTTGCATTTGTTGCTCAAATATTCCATCAAAGgtgggaaatgaatagtgtcagcttattgacattttgagacttcgtaga---aatccctttttgttcttccttttctatttggctggtagtgtcatag-cagcta------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74239931|gb|DT647845.1|DT647845
EST:     GGATCTGCCAATCTAAATCTTGCATTTGTTGCACAAATATTCCAGCACAG                         GAATGGTCTGACCAGTGACACCAAACAAGTTACCCTCACACAGACAGCAAC
genomic: GGATCTGCCAATCTAAATCTTGCATTTGTTGCACAAATATTCCAGCACAGgtaaacatgg ... tgctgttcagGAATGGTCTGACCAGTGACACCAAACAAGTTACCCTCACACAGACAGCAAC