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AGAGTGGAGAGCTTATATTACAACGACGGGAAAAAATATTTCTTCACTACCAGAACCTCAAAGTCTTGAAGCTGTTGTCAGTTCACTTATATGTGAAAAGgtaaaccaatatgtttcacttgctgatgtggtctggttcttagtctaaaaggcaataaaagaacataattctgatatttgaatatgtttcacttgctgat...
species | Zea mays |
transcript | GRMZM2G376074_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAGAACCTCAGAGTCTTGAAGCTGTTGTCAGTTCACTTATATGTGAAAAG CATTCGAGATTGCTGCAAAAGCCTTTGGATCTTGTTTGTAAGCGCGGAAGCEST: gi|67022296|gb|CO451045.1|CO451045
genomic: CAGAACCTCAAAGTCTTGAAGCTGTTGTCAGTTCACTTATATGTGAAAAGgtaaaccaat ... atattttcagCATTCGAGATTGCTGCAAAAGCCTTTGGATCTTGTTTGTAAGCGCGGAAGC
EST: CAGAACCTCAAAGTCTTGAAGCTGTTGTCAGTTCACTTATATGTGAAAAG CATTCGAGATTGCTGCAAAAGCCTTTGGATCTTGTTTGTAAGCGCGGAAGCEST: gi|32931325|gb|CF036137.1|CF036137
genomic: CAGAACCTCAAAGTCTTGAAGCTGTTGTCAGTTCACTTATATGTGAAAAGgtaaaccaat ... atattttcagCATTCGAGATTGCTGCAAAAGCCTTTGGATCTTGTTTGTAAGCGCGGAAGC
EST: CAGAACCTCAAAGTCTTGAAGCTGTTGTCAGTTCACTTATATGTGAAAAG CATTCGAGATTGCTGCAAAAGCCTTTGGATCTTGTTTGTAAGCGCGGAAGCEST: gi|211061749|gb|FL343242.1|FL343242
genomic: CAGAACCTCAAAGTCTTGAAGCTGTTGTCAGTTCACTTATATGTGAAAAGgtaaaccaat ... atattttcagCATTCGAGATTGCTGCAAAAGCCTTTGGATCTTGTTTGTAAGCGCGGAAGC
EST: CAGAACCTCAGAGTCTTGAAGCTGTTGTCAGTTCACTTATATGTGAAAAG CATTCGAGATTGCTGCAAAAGCCTTTGGATCTTGTTTGTAAGCGCGGAAGC
genomic: CAGAACCTCAAAGTCTTGAAGCTGTTGTCAGTTCACTTATATGTGAAAAGgtaaaccaat ... atattttcagCATTCGAGATTGCTGCAAAAGCCTTTGGATCTTGTTTGTAAGCGCGGAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGTGGAGAGCTTATATTACAACGACGGGAAAAAATATTTCTTCACTACCAGAACCTCAAAGTCTTGAAGCTGTTGTCAGTTCACTTATATGTGAAAAGgtaaaccaatatgtttcacttgctgatgtggtctggttcttagtctaaaaggcaataaaagaacataattctgatatttgaatatgtttcacttgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT