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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACTgtgagtataacgaggaatgcaccttttatgtagtttcgttgacatgacatgctactctattattcttatggatgtacttttgagtttgcttatcatactg...

Basic information

species Zea mays
transcript GRMZM2G374779_T03
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G374779_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os03g01150.1 (Oryza sativa), 5'ss of exon 9
GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACTgtgagtataacgaggaatgcac-cttttatgtagtttcgttgacatgacatgctactctattattcttatggatgtacttttgagtttgcttatca--tactg
| |||||||||||||||||| ||| | |||||||||||||||||| |     |   || |  ||||| |||  |  |  |||   |||||  | || | |   |    ||| || | |||| | ||   || |||  || | 
GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACTgtgagttttttatgacttgaattcttttttgtcatcaccctgaa--gacataatgctttttatgttgcttggttgaaattttaatttgatttttcaattatt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32854010|gb|CD993691.1|CD993691
EST:     GGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT                         GATATGGCAGATTATCTGAAGAGTTGTAGGTTTCTTCCAAAACTTAACAAT
genomic: GGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACTgtgagtataa ... tatgtatcagGATATGGCAGATTATCTGAAGAGTTGTAGGTTTCTTCCAAAACTTAACAAT
EST: gi|60353728|gb|DN220701.1|DN220701
EST:     GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT                         GATATGGCAGATTATCTGAAGAGTTGTAGGTTTCTTCCAAAACTTAACAAT
genomic: GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACTgtgagtataa ... tatgtatcagGATATGGCAGATTATCTGAAGAGTTGTAGGTTTCTTCCAAAACTTAACAAT
EST: gi|18175059|gb|BM350447.1|BM350447
EST:     TCAAAATCCCAACT                         GATATGGCAGATTATCTGAAGAGTTGTAGGTTTCTTCCAAAACTTAACAAT
genomic: TCAAAATCCCAACTgtgagtataa ... tatgtatcagGATATGGCAGATTATCTGAAGAGTTGTAGGTTTCTTCCAAAACTTAACAAT
EST: gi|91871940|gb|EB401897.1|EB401897
EST:     AAATCCCAACT                         GATATGGCAGATTATCTGAAGAGTTGTAGGTTTCTTCCAAAACTTAACAAT
genomic: AAATCCCAACTgtgagtataa ... tatgtatcagGATATGGCAGATTATCTGAAGAGTTGTAGGTTTCTTCCAAAACTTAACAAT
EST: gi|71331117|gb|DR802384.1|DR802384
EST:     GGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT                         GATATGGCAGATTATCTGAAGAGTTGTAGGTTTCTTCCAAAACTTAACAAT
genomic: GGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACTgtgagtataa ... tatgtatcagGATATGGCAGATTATCTGAAGAGTTGTAGGTTTCTTCCAAAACTTAACAAT