Sequence
atgc intronic sequence ATGC exonic sequenceTCCATACAATCAAATTGATGACTATGGTCAAGAAAAAAGTTGGAAGATGCAAAAGCAAGCTCTACAAAAGCGGAAGAGCCAAATCGCTTCTGTTGTGGAAgtatggaagtttgtgttatcttggccatttattttatgctcaatgctatggtgtctaaagtttgcttttgaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g02884.1 (Oryza sativa), 5'ss of exon 3
TCCATACAATCAAATTGATGACTATGGTCAAGAAAAAAGTTGGAAGATGCAAAAGCAAGCTCTACAAAAGCGGAAGAGCCAAATCGCTTCTGTTGTGGAAgtatggaagtt-tgtgttatcttggccatttattttatgctcaatgctatggt-----gtctaaagtttgcttttgaacag
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TCCTTACAATCAAATTGATGACTATGGTCAAGAGAAAAGTTGGAAGATGCAAAAGCAAGCTCTAAGGAAGAGGAAGAGCCAAATTGCTTCGGTTGTAGAAgtatgtagttcctgcatttttatgcccact-atttcctgttcagagctttggtctcccctctaaactcatcttttgagcag
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA05G34180.1 (Glycine max), 5'ss of exon 9
TCCATACAATCAAATTGATGACTATGGTCAAGAAAAAAGTTGGAAGATGCAAAAGCAAGCTCTAC------AAAAGCGGAAGAGCCAAATCGCTTCTGTTGTGGAAgtatggaagtt------------------tgtgttatcttggccatttattttatgctcaatgctatggtgtctaaagtttgcttttgaacag
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------TAATCAAATTGATGACTATGGTCAAGAAAAAACATGGAAAATGCAGAAGCAAGCTCAAGCTTTCAGAAAAAGAAAGAGCCACATTGCTTCTGCTGTTGAGgtacacaagttgagctggaaagcttttcctttttcattttaggtgtgtaatttttggctaattctgt--ttgcttctctctgattttgcatag
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA08G05480.1 (Glycine max), 5'ss of exon 9
TCCATACAATCAAATTGATGACTATGGTCAAGAAAAAAGTTGGAAGATGCAAAAGCAAGCTCTAC------AAAAGCGGAAGAGCCAAATCGCTTCTGTTGTGGAAgtatggaagtt----tgtgttatcttggccatttattttatgctc--aatgct------atggtgtctaaagtt-tgcttttgaacag
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------TAATCAAATTGATGACTATGGTCAAGAGAAAACATGGAAAATGCAAAAGCAAGCTCAAGCTTTCAGAAAAAGAAAGAGCCAGATTGCTTCTGCTGTTGAGgtacacaaattgagctggaaagttttgccttttcattttaggtctgtaatttttggctaattctgtttgtttctctgattttgcatag
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA09G18490.1 (Glycine max), 5'ss of exon 4
TCCATACAATCAAATTGATGACTATGGTCAAGAAAAAAGTTGGAAGATGCAAAAGCAAGCTCTACAAAAGCGGAAGAGCCAAATCGCTTCTGTTGTGGAAgtatggaagtttgtgttatcttggccatttattttatgctcaatgctatggtgtctaaagtttgcttttgaacag---------
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TCCTGACAATCAAATTGATGACTATGGTCAAGAAAGGATTTGGAAAATGAACAAACAGGCCCCAAGAAAGAGGAAAAGCCAAATTGCTTCTTCTGTAGAGgtatttaaagattctcaagcta---cagtcactccattccttgcaatgta-tttattaagttcattttggaaaaatattaccag
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 9
lower sequence: AT1G48650.2 (Arabidopsis thaliana), 5'ss of exon 9
TCCATACAATCAAATTGATGACTATGGTCAAGAAAAAAGTTGGAAGATGCAAAAGCAAGCTC--TACAAAAGCGGAAGAGCCA-AATCGCTTCTGTTGTGGAAgtatggaagt--ttgtgttatcttggcc---atttattttatgctcaatgctatggtgtctaaag----tttgcttttgaacag--------
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---ATATAATCAAATTGATGATTATGGTGAGGAAAAGACATGGAAGATGCAAAAACAAGCTCAGTTCAAAAAAAGAAAATCCCTAATATCCTCTGCAGTAGAGgtacagaagaagttatgttatattacactacatacattgtatcttctcagattatttgcgtaaaagtattcttcttctgaatgtgtgagcag
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 9
lower sequence: AT2G01130.1 (Arabidopsis thaliana), 5'ss of exon 9
TCCATACAATCAAATTGATGACTATGGTCAAGAAAAAAGTTGGAAGATGCAAAAGCAAGCTCTACAAAAGCGGAAGAGCCAAATCGCTTCTGTTGTGGAAgtatggaagtttgtgttatcttggccatttattttatgctcaatgctatggtgtctaaagtttgcttttgaacag
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TCCATACAATCAAATTGATGATTATGGTCAAGAAAGAACGTGGAAGATGAACAAACAGATCCCAAAAAAACGGAAGAGCCAAATTACCTTTGTCGTTGAGgtatctagaaaaagaatatcagcagc-ttaactctacatgttaggtcctcatttctttttcccttatgcaaacag
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 9
lower sequence: Vv17s0000g03030.t01 (Vitis vinifera), 5'ss of exon 8
TCCATACAATCAAATTGATGACTATGGTCAAGAAAAAAGTTGGAAGATGCAAAAGCAAGCTCTACAAAAGCGGAAGAGCCAAATCGCTTCTGTTGTGGAAgtatggaagttt----gtgttatcttggccatttattttatgctcaatgctatggtgtctaaagtttgcttttgaacag
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TCCTTATAATCAAATTGATGATTATGGTCAAGAAAAGGTGTGGAAAATGCAGAAACAAGCTCTCAGAAAGAGAAAGAGCCAAATTGCTTCCTCGGTTGAGgtataacagttttatgaggctacatactgttgttgtttttctataaatgc-atcttgaacactttatacttgtgaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31351858|gb|CD436215.1|CD436215EST: AAAAGCAAGCTCTACAAAAGCGGAAGAGCCAAATCGCTTCTGTTGTGGAA GATGCTGTTGAAGCTGCTGATTTGAGGGACTATAGTTCGCGAACTCGTGAT
genomic: AAAAGCAAGCTCTACAAAAGCGGAAGAGCCAAATCGCTTCTGTTGTGGAAgtatggaagt ... ttttgaacagGATGCTGTTGAAGCTGCTGATTTGAGGGACTATAGTTCGCGAACTCGTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCATACAATCAAATTGATGACTATGGTCAAGAAAAAAGTTGGAAGATGCAAAAGCAAGCTCTACAAAAGCGGAAGAGCCAAATCGCTTCTGTTGTGGAAgtatggaagtttgtgttatcttggccatttattttatgctcaatgctatggtgtctaaagtttgcttttgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA