Sequence
atgc intronic sequence ATGC exonic sequenceGTTGATTGCAAAGCTTCAGGAGGTTGAAGATTGGCTGTATGAAGATGGTGAGGATGAGACAAAGGGAGTATATATTTCTAAACTGGAAGAGCTTAAAAAGgtattcctatatgcactgaattacagcactgctagccatggagacttctcttcttgcttgcttgtggattagatgacatgagttttctaaaattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G361605_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os05g08840.1 (Oryza sativa), 5'ss of exon 6
GTTGATTGCAAAGCTTCAGGAGGTTGAAGATTGGCTGTATGAAGATGGTGAGGATGAGACAAAGGGAGTATATATTTCTAAACTGGAAGAGCTTAAAAAGgtattcctata--tgcact----gaattacagcactgctagccatggagacttctcttcttgcttgcttgtggatta-gatg-acatgagttttctaaaattgcag
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GTTTATTGCCAAGCTTCAGGAGGTTGAGGATTGGCTGTACGAAGATGGTGAAGATGAGACAAAAGGGGTTTATATTGCAAAGCTGGAAGAACTTAAAAAGgtacctcttttattgcacttcttggtttacattgtgtctttatgtgttggtttggtttgttcttggacattgagttttgatatgcctgaacttttttag-------
upper sequence: GRMZM2G361605_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA13G43630.2 (Glycine max), 5'ss of exon 7
GTTGATTGCAAAGCTTCAGGAGGTTGAAGATTGGCTGTATGAAGATGGTGAGGATGAGACAAAGGGAGTATATATTTCTAAACTGGAAGAGCTTAAAAAGgtattcctatatgcactgaattacagcactgctagccatggagacttctcttcttgcttgcttg--tggattagatgacatgagttttctaaaat-tgcag--
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ATTTACTGCTAAACTTCAGGAGGTGGAAGACTGGCTATATGAGGATGGTGAAGATGAAACTAAAGGCGTATACATTGCCAAGCTAGAAGAGCTCAAGAAGgtaag---aaattttagggattagaaaatctctgacccgagctgatctggtatgctaaggcctggttgttttagagaatacttttatccccacccgtgtaaaa
upper sequence: GRMZM2G361605_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA08G22100.1 (Glycine max), 5'ss of exon 6
GTTGATTGCAAAGCTTCAGGAGGTTGAAGATTGGCTGTATGAAGATGGTGAGGATGAGACAAAGGGAGTATATATTTCTAAACTGGAAGAGCTTAAAAAGgt------attcctatatgcactgaattacagcactgctagccatggagacttctcttcttgctt---gcttgtggattagatgacatgagttttctaaaattgcag----------------------------------------------------------------------------
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TTTTACTGCTAAACTTCAGGAAGTGGAAGATTGGCTTTATGATGAGGGTGAAGATGAAACTAAAGGTGTATATATTGCCAAGCTTGAAGAACTCAAAAAGgttaggaagttttgttgataagggaatcctagctcccattcctcagtcaaactgtaatattgtgcaaggaaaagggaccagagtacctcttgctgttatcctttgtgtttttttgcacaaacataaatggtgtgaggtatttccatgctagttttaacataggcaatctcaatgtgattgcag
upper sequence: GRMZM2G361605_T02 (Zea mays), 5'ss of exon 9
lower sequence: Vv09s0002g04680.t01 (Vitis vinifera), 5'ss of exon 6
GTTGATTGCAAAGCTTCAGGAGGTTGAAGATTGGCTGTATGAAGATGGTGAGGATGAGACAAAGGGAGTATATATTTCTAAACTGGAAGAGCTTAAAAAGgtattcctatatgcactgaattacagcactgctagccatggagacttctcttcttgcttgcttgtggattagatgacatgagttttctaaaattgcag
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GTTTACTGCTAAACTGCAGGAGGTAGAAGATTGGTTGTATGAAGACGGTGAGGATGAAACAAAAGGTGTTTACATTGCCAAACTCGAGGAACTTAAGAAGgtaat--tacactttcttaactcca--aatggtttcttt--agtttgatcttcttagtt--ttatggttgacgtgaaaaata------aaaattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60337311|gb|DN204284.1|DN204284EST: GACAAAGGGAGTATATATTTTTAAACTGGAAGAGCTTAAAAAG ATTGGCGATCCAATTGAGGCACGGCACAAGGAGTGGACGGAAAGGGGTTCC
genomic: GACAAAGGGAGTATATATTTCTAAACTGGAAGAGCTTAAAAAGgtattcctat ... aaaattgcagATTGGCGATCCAATTGAGGCACGGCACAAGGAGTGGACGGAAAGGGGTTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGATTGCAAAGCTTCAGGAGGTTGAAGATTGGCTGTATGAAGATGGTGAGGATGAGACAAAGGGAGTATATATTTCTAAACTGGAAGAGCTTAAAAAGgtattcctatatgcactgaattacagcactgctagccatggagacttctcttcttgcttgcttgtggattagatgacatgagttttctaaaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT