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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTGAAGCTCAGAATATGGCGGCATGATATCAATGAACCATGTGTTCCTTTAGCACCTGAGGCATGCCGTCTGACGATTTCTCATGCCGTTCTTTGCAGgtgcttcactgtgaatttcatttcttgattttattttggtaaaataaaaaaactgttatttcaattactaattttagtttactgtttgctaatattgcaa...

Basic information

species Zea mays
transcript GRMZM2G353548_T04
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G353548_T05 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g18820.2 (Oryza sativa), 5'ss of exon 10
CAGTGAAGCTCAGAATATGGCGGCATGATATCAATGAACCATGTGTTCCTTTAGCACCTGAGGCATGCCGTCTGACGATTTCTCATGCCGTTCTTTGCAGgtgcttcactgtgaatttcatttcttgatttt---attttggtaaaataa-aaaaactgttatttcaattactaattttagtttactg-tttgctaatattgcaa
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CAGTGAAGCTTAGAATATGGCGGCATGATATCAAGGATCCATGTGTTACATTGGAACCCGAGGCATGCCGGTTGACAATTTCTCATGCCGTTCTCTGCAGgtgcttcattgtacttttggttttcttgtattcacatttttcctgcacaacacaaacttttatttcctttctgttgtttcctgtattgctttgcctgaat-----