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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAAGAAATTACAAAAACTACGTGAATTTGTTCGTTCTGAATATGATCATTCATGTTTACGGTCCTGCCGTTCGCGTGCACTTTACGAGGGGCTAAAGgtatgtatcttttgtttcctgctttatttgcagctcttttttgatatttcagtttcatggttggattatctggggcaaagtcggtatgtagtatccatga...

Basic information

species Zea mays
transcript GRMZM2G350818_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G350818_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os05g09360.1 (Oryza sativa), 5'ss of exon 14
GAGAAAGAAATTACAAAAACTACGTGAATTTGTTCGTTCTGAATATGATCATTCATGTTTACGGTCCTGCCGTTCGCGTGCACTTTACGAGGGGCTAAAGgtatgtatcttttgtttcctgctttatttgcagctcttttttgatatttcagtttcatggttggattatctggggcaaagtcggtatgtagtatccatga----
 ||||  |||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||||| || ||||| |||||||||   |||   | ||   |   |     |  ||||  || | ||| |    |  |     || |  |    |||  |     || | | ||    |    
AAGAAGAAAATTACAAAGATTACGTGAATTTGTTCGATCTGAATATGATCATTCATGTTTACGGTCTTGCCGTTCACGTGCTCTTTATGAAGGGCTGAAGgtatgttcttttcagtgccaaatccctggtatgagctttagtggttttttatgagctcgac--aatcaatttcatcaa--ttatcttggaatttcttgaaatta

upper sequence: GRMZM2G350818_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA05G36070.2 (Glycine max), 5'ss of exon 17
GAGAAAGAAATTACAAAAACTACGTGAATTTGTTCGTTCTGAATATGATCATTCATGTTTACGGTCCTGCCGTTCGCGTGCACTTTACGAGGGGCTAAAGgtatgt-atcttttgtttcctgc-tttatttgcagctcttttttgatatttcagtttcatggttggattatctggggcaaagtcggta-tgtagtatccatga
||||||||||||||| |||||  | ||||||||||| || || ||||| ||| |||| || || || |||||||| || |||||||| || ||||| ||||||  | |   |   |||  ||  ||| ||     | ||   |||   | |  |  |  |   |   || |||  |    | ||  || ||   ||   |   
GAGAAAGAAATTACAGAAACTTAGAGAATTTGTTCGATCAGAGTATGACCATGCATGCTTGCGCTCTTGCCGTTCACGAGCACTTTATGAAGGGCTGAAGgtacttcagagtaaattttatgaatttgttccttaccctaaattgggctcttggcatactaaattt-ttgtctcag-ttcattcattactgccctactgaac-

upper sequence: GRMZM2G350818_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA08G03550.1 (Glycine max), 5'ss of exon 18
GAGAAAGAAATTACAAAAACTACGTGAATTTGTTCGTTCTGAATATGATCATTCATGTTTACGGTCCTGCCGTTCGCGTGCACTTTACGAGGGGCTAAAGgtatgtatcttttg-tttcctgctttatttgcagctcttttttgatatttcagtttcatggttggattatctgg-ggcaaagtcggta-tgtagtatccatga
||||||||||||||| |||||  | ||||||||||| || || ||||| ||| |||| || || || |||||||| || |||||||| || ||||| ||||||  ||    ||  |||  ||  ||  || |    | |  ||||   |   |   |||  |    |||| |    ||  | ||  || ||   ||   |   
GAGAAAGAAATTACAGAAACTTAGAGAATTTGTTCGATCAGAGTATGACCATGCATGCTTGCGTTCTTGCCGTTCACGAGCACTTTATGAAGGGCTGAAGgtacttaagagttaattttatgaatttgttccttaccctaattgaggctcttgg--catactaaatttatgtctcagctcattcattactgccctactgaac-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67015716|gb|CO444465.1|CO444465
EST:     ATTCATGTTTACGGTCCTGCCGTTCGCGTGCACTTTACGAGGGGCTAAAG                         GTAGCTGCTACTCCAGATTTAATGCTGGGTTATTTAGATTTCTTCCTTGGT
genomic: ATTCATGTTTACGGTCCTGCCGTTCGCGTGCACTTTACGAGGGGCTAAAGgtatgtatct ... aaattaatagGTAGCTGCTACTCCAGATTTAATGCTGGGTTATTTAGATTTCTTCCTTGGT
EST: gi|31348714|gb|CD433071.1|CD433071
EST:     ATTCATGTTTACGGTCCTGCCGTTCGCGTGCACTTTACGAGGGGCTAAAG                         GTAGCTGCTACTCCAGATTTAATGCTGGGTTATTTAGATTTCTTCCTTGGT
genomic: ATTCATGTTTACGGTCCTGCCGTTCGCGTGCACTTTACGAGGGGCTAAAGgtatgtatct ... aaattaatagGTAGCTGCTACTCCAGATTTAATGCTGGGTTATTTAGATTTCTTCCTTGGT