1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
AAATGTAGAGAATAATATGTTTTCTGGACCAGTTCCTCCGAAGCTGCTGAACATACCAAACTTCAAgtgagatacttttcctttacctattgcaaacttcttggtgcagcccaattagtcctgtttttttctctacattctgtcctatccttcaacactttgatgattgggccagttacatataactcattaacttcttttgcctacag
species | Zea mays |
transcript | GRMZM2G335638_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATGTTTTCTGGACCAGTTCCTCCGAAGCTGCTGAACATACCNAACTTCAA AAATGATGGGAATCCTTTTAATACCAGCATAGCTCCCTCTACCTCACCCTCEST: gi|18384547|gb|BM417746.1|BM417746
genomic: ATGTTTTCTGGACCAGTTCCTCCGAAGCTGCTGAACATACCAAACTTCAAgtgagatact ... ttgcctacagAAATGATGGGAATCCTTTTAATACCAGCATAGCTCCCTCTACCTCACCCTC
EST: ATGTTTTCTGGACCAGTTCCTCCGAAGCTGCTGAACATACCAAACTTCAA AAATGATGGGAATCCTTTTAATACCAGCATAGCTCCCTCTACCTCACCCTCEST: gi|16746060|gb|BM032490.1|BM032490
genomic: ATGTTTTCTGGACCAGTTCCTCCGAAGCTGCTGAACATACCAAACTTCAAgtgagatact ... ttgcctacagAAATGATGGGAATCCTTTTAATACCAGCATAGCTCCCTCTACCTCACCCTC
EST: ATGTTTTCTGGACCAGTTCCTCCGAAGCTGCTGAACATACCAAACTTCAA AAATGATGGGAATCCTTTTAAT-CCAGCATAGCTCCCTCT-CCTC-CCCTCEST: gi|18384548|gb|BM417747.1|BM417747
genomic: ATGTTTTCTGGACCAGTTCCTCCGAAGCTGCTGAACATACCAAACTTCAAgtgagatact ... ttgcctacagAAATGATGGGAATCCTTTTAATACCAGCATAGCTCCCTCTACCTCACCCTC
EST: ATGTTTTCTGGACCAGTTCCTCCGAAGCTGCTGAACATACCAAACTTCAA AAATGATGGGAATCCTTTTAATACCAGCATAGCTCCCTCTACCTCACCCTCEST: gi|18384652|gb|BM417851.1|BM417851
genomic: ATGTTTTCTGGACCAGTTCCTCCGAAGCTGCTGAACATACCAAACTTCAAgtgagatact ... ttgcctacagAAATGATGGGAATCCTTTTAATACCAGCATAGCTCCCTCTACCTCACCCTC
EST: ATGTTTTCTGGACCAGTTCCTCCGAAGCTGCTGAACATACCAAACTTCAA AAATGATGGGAATCCTTTTAATACCAGCATAGCTCCCTCTACCTCACCCTC
genomic: ATGTTTTCTGGACCAGTTCCTCCGAAGCTGCTGAACATACCAAACTTCAAgtgagatact ... ttgcctacagAAATGATGGGAATCCTTTTAATACCAGCATAGCTCCCTCTACCTCACCCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGTAGAGAATAATATGTTTTCTGGACCAGTTCCTCCGAAGCTGCTGAACATACCAAACTTCAAgtgagatacttttcctttacctattgcaaacttcttggtgcagcccaattagtcctgtttttttctctacattctgtcctatccttcaacactttgatgattgggccagttacatataactcattaacttcttttgcctacag
- - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - GCTGCT