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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCGCCGCCAGCGCGTTCGGTGGCGATGTCTCGTGGTTCGCCGATGGGATGCCGACGTCGTCGATCTTTGCCGCGTCGGACCCAATCTTGTACTTTAGgtaggcgaaattccatcggatgggcgacatacagatatatatcacctctttttcgctttatttttgtcattaaaaaatatgggttgagcctatcattattgctggcggtttgcccttgttgttccatcag

Basic information

species Zea mays
transcript GRMZM2G334225_T01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74233593|gb|DT641507.1|DT641507
EST:     ATGCCGACGTCGTCGATCTTTGCCGCGTCGGACCCAATCTTGTACTTTAG                         GGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGT
genomic: ATGCCGACGTCGTCGATCTTTGCCGCGTCGGACCCAATCTTGTACTTTAGgtaggcgaaa ... gttccatcagGGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGT
EST: gi|74233594|gb|DT641508.1|DT641508
EST:     ATGCCGACGTCGTCGATCTTTGCCGCGTCGGACCCAATCTTGTACTTTAG                         GGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGT
genomic: ATGCCGACGTCGTCGATCTTTGCCGCGTCGGACCCAATCTTGTACTTTAGgtaggcgaaa ... gttccatcagGGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGT
EST: gi|12046148|gb|BF728287.1|BF728287
EST:     ATGCCGACGTCGTCGATCTTTGCCGCGTCGGACCCAATCTTGTACTTTAG                         GGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGT
genomic: ATGCCGACGTCGTCGATCTTTGCCGCGTCGGACCCAATCTTGTACTTTAGgtaggcgaaa ... gttccatcagGGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGT
EST: gi|6827571|gb|AW331214.1|AW331214
EST:     ATGCCGACGTCGTCGATCTTTGCCGCGTCGGACCCAATCTTGTACTTTAG                         GGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGT
genomic: ATGCCGACGTCGTCGATCTTTGCCGCGTCGGACCCAATCTTGTACTTTAGgtaggcgaaa ... gttccatcagGGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGT
EST: gi|78179029|gb|DV549402.1|DV549402
EST:     ATGCCGACGTCGTCGATCTTTGCCGCGTCGGACCCAATCTTGTACTTTAG                         GGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGT
genomic: ATGCCGACGTCGTCGATCTTTGCCGCGTCGGACCCAATCTTGTACTTTAGgtaggcgaaa ... gttccatcagGGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGT
EST: gi|6827545|gb|AW331188.1|AW331188
EST:     CCAATCTTGTACTTTAG                         GG-TC-GGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGT
genomic: CCAATCTTGTACTTTAGgtaggcgaaa ... gttccatcagGGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGT