1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGCAATGATGAGCTCCGATTAGTTTTTGAGACTGATAGCACGGACATGTTCCAGATGAATAAGCTTCTGTCCAAGCATATACGTCCTCTGGAGAGTAAAAgtaggtgtttctcctgatgcacaatatctttgttttgcagaaaaatactatcttctttactgaacatgtggtccaaattgtaccag
species | Zea mays |
transcript | GRMZM2G332809_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CCAGATGAATAAGCTTCTGTCCAAGCATATACGTCCTCTGGAGAGTAAAA ATGATTCGAAACCAGAAGCAAAGAAATTGAAGCCACAGGGTGATGAACCAAEST: gi|29130777|gb|CB381481.1|CB381481
genomic: CCAGATGAATAAGCTTCTGTCCAAGCATATACGTCCTCTGGAGAGTAAAAgtaggtgttt ... attgtaccagATGATTCGAAACCAGAAGCAAAGAAATTGAAGCCACAGGGTGATGAACCAA
EST: CCAGATGAATAAGCTTCTGTCCAAGCATATACGTCCTCTGGAGAGTAAAA ATGATTCGAAACCAGAAGCAAAGAAATTGAAGCCACAGGGTGATGAACCAAEST: gi|29945156|gb|CB815497.1|CB815497
genomic: CCAGATGAATAAGCTTCTGTCCAAGCATATACGTCCTCTGGAGAGTAAAAgtaggtgttt ... attgtaccagATGATTCGAAACCAGAAGCAAAGAAATTGAAGCCACAGGGTGATGAACCAA
EST: CCAGATGAATAAGCTTCTGTCCAAGCATATACGTCCTCTGGAGAGTAAAA ATGATTCGAAACCAGAAGCAAAGAAATTGAAGCCACAGGGTGATGAACCAAEST: gi|9028641|gb|BE238681.1|BE238681
genomic: CCAGATGAATAAGCTTCTGTCCAAGCATATACGTCCTCTGGAGAGTAAAAgtaggtgttt ... attgtaccagATGATTCGAAACCAGAAGCAAAGAAATTGAAGCCACAGGGTGATGAACCAA
EST: CCAGATGAATAAGCTTCTGTCCAAGCATATACGTCCTCTGGAGAGTAAAA ATGATTCGAAACCAGAAGCAAAGAAATTGAAGCCACAGGGTGATGAACCAA
genomic: CCAGATGAATAAGCTTCTGTCCAAGCATATACGTCCTCTGGAGAGTAAAAgtaggtgttt ... attgtaccagATGATTCGAAACCAGAAGCAAAGAAATTGAAGCCACAGGGTGATGAACCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAATGATGAGCTCCGATTAGTTTTTGAGACTGATAGCACGGACATGTTCCAGATGAATAAGCTTCTGTCCAAGCATATACGTCCTCTGGAGAGTAAAAgtaggtgtttctcctgatgcacaatatctttgttttgcagaaaaatactatcttctttactgaacatgtggtccaaattgtaccag
- - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA