1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACAATTGATGACTTGATAGAGACCGGAAAAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGAGGCCAGgtatgtggtctaccatagttacataggtcattactagtcatgaggtatattggtttcaggcatcaggtctagctatgtctgtttacaacattgatttgttataaatacgttacctttttgacatttgcag
species | Zea mays |
transcript | GRMZM2G330772_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGARGCCAG ATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGATEST: gi|211421982|gb|FL437726.1|FL437726
genomic: AAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGAGGCCAGgtatgtggtc ... acatttgcagATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGAT
EST: AAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGAGGCCAG ATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGATEST: gi|211224343|gb|FL202744.1|FL202744
genomic: AAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGAGGCCAGgtatgtggtc ... acatttgcagATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGAT
EST: AAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGARGCCAG ATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGATEST: gi|211202912|gb|FL437151.1|FL437151
genomic: AAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGAGGCCAGgtatgtggtc ... acatttgcagATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGAT
EST: CAAATATTCAAAGATGCTATCCAACATCAGGGAAGAGGCCAG ATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGATEST: gi|211495566|gb|FL127190.1|FL127190
genomic: CAAATATTCAAAGATGCTATCCAACATCAGGGAAGAGGCCAGgtatgtggtc ... acatttgcagATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGAT
EST: AAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGAGGCCAG ATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGATEST: gi|211226398|gb|FL202747.1|FL202747
genomic: AAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGAGGCCAGgtatgtggtc ... acatttgcagATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGAT
EST: AAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGARGCCAG ATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGATEST: gi|60359751|gb|DN226724.1|DN226724
genomic: AAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGAGGCCAGgtatgtggtc ... acatttgcagATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGAT
EST: AAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGAGGCCAG ATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGATEST: gi|211224342|gb|FL202743.1|FL202743
genomic: AAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGAGGCCAGgtatgtggtc ... acatttgcagATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGAT
EST: AAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGAGGCCAG ATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGATEST: gi|67020224|gb|CO448973.1|CO448973
genomic: AAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGAGGCCAGgtatgtggtc ... acatttgcagATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGAT
EST: AAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGAGGACAG ATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGATEST: gi|60395077|gb|DN227946.1|DN227946
genomic: AAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGAGGCCAGgtatgtggtc ... acatttgcagATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGAT
EST: AAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGAGGCCAG ATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGATEST: gi|67020710|gb|CO449459.1|CO449459
genomic: AAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGAGGCCAGgtatgtggtc ... acatttgcagATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGAT
EST: AAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGAGGCCAG ATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGATEST: gi|9732911|gb|BE511663.1|BE511663
genomic: AAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGAGGCCAGgtatgtggtc ... acatttgcagATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGAT
EST: AAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGAGGCCAG ATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGAT
genomic: AAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGAGGCCAGgtatgtggtc ... acatttgcagATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAATTGATGACTTGATAGAGACCGGAAAAAGTGAGCAAATATTCAAAGATGCTATCCAACATCAGGGAAGAGGCCAGgtatgtggtctaccatagttacataggtcattactagtcatgaggtatattggtttcaggcatcaggtctagctatgtctgtttacaacattgatttgttataaatacgttacctttttgacatttgcag
- - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG