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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGTTGCTGATGTCCATCGCACCTTACTATACGGGGGCATATTTTTGTACCCAGCAGACCAGAAGAGTCCAAACGGGAAACTACGgtataacaaagacaacaatcttttttttacttactattactactcccgggactgtagtttagcttcctgtcctcacactggttggttctatgtggaattgcag

Basic information

species Zea mays
transcript GRMZM2G322953_T04
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G322953_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os05g36270.1 (Oryza sativa), 5'ss of exon 9
TATGGTTGCTGATGTCCATCGCACCTTACTATACGGGGGCATATTTTTGTACCCAGCAGACCAGAAGAGTCCAAACGGGAAACTACGgtataacaaagacaacaatcttttttttacttactattactactcccgggactgtagtttagcttcctgtcctcacactggttggttctatgtggaattgcag
|||||||||||||||||| || || || ||||| || ||||||||||||||||| || || |||||||| |||||||| ||||| ||||||    | | ||||        | | |      | | | |     | |     | | ||| || |||           ||| | |  |||||| || ||||
TATGGTTGCTGATGTCCACCGTACTTTGCTATATGGAGGCATATTTTTGTACCCTGCGGATCAGAAGAGCCCAAACGGAAAACTTCGgtatgctgatg-caac--------tctga------actgcaaaggtagagtagtaaatgtagattgctga---------agttcgctacatgtggcatggcag

upper sequence: GRMZM2G322953_T03 (Zea mays), 5'ss of exon 8
lower sequence: Vv18s0072g00770.t01 (Vitis vinifera), 5'ss of exon 10
TATGGTTGCTGATGTCCATCGCACCTTACTATACGGGGGCATATTTTTGTACCCAGCAGACCAGAAGAGTCCAAACGGGAAACTACGgtataacaaagacaacaatcttttttttacttactattactactcccgggactgtagtttagcttcctgtcctca-cactggttggttct-atgtggaattgcag-------------------
 ||||| ||||||||||| ||||| ||||| ||||| || || ||||||||||| || ||  ||||||| || ||||| ||||| ||||| |  |  ||       | ||  | |   | |    |||  || |   ||     |  |  | |   |   || ||    ||  || |  ||    | |   |                   
CATGGTAGCTGATGTCCACCGCACATTACTTTACGGTGGTATCTTTTTGTACCCTGCTGATAAGAAGAGCCCCAACGGAAAACTGCGgta-agtactgatgtttcaccttcctctctctccctcaact--tctcaaaacaaatttgcaaatgcagatttacaacaacaattaatttttgtgactgaatttggtttaacttgtatggaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32861683|gb|CF001365.1|CF001365
EST:     GGCATATTTTTGTACCCAGCAGACCAGAAGAGTCCAAACGGGAAACTACG                         CGTTCTGTATGAAGTCTTCCCGATGTCATTCCTGATGGAACAAGCTGGAGG
genomic: GGCATATTTTTGTACCCAGCAGACCAGAAGAGTCCAAACGGGAAACTACGgtataacaaa ... ggaattgcagCGTTCTGTATGAAGTCTTCCCGATGTCATTCCTGATGGAACAAGCTGGAGG
EST: gi|74034973|gb|DT535463.1|DT535463
EST:     GGCATATTTTTGTACCCAGCAGACCAAAAGAATCCAAACGGGAAACTACG                         CGTTCTGTACGAAGTCTTCCCGATGTCATTCCTGATGGAACAAGCTGGAGG
genomic: GGCATATTTTTGTACCCAGCAGACCAGAAGAGTCCAAACGGGAAACTACGgtataacaaa ... ggaattgcagCGTTCTGTATGAAGTCTTCCCGATGTCATTCCTGATGGAACAAGCTGGAGG