1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CGTCCAGCGGCGTGCCCCTCCGTCTTCCGTCACTCCAGATCCGAGGCAGTTCACTGCTGGGACGCAGTCAGAGCTGTTCGGTGGAGCTGACAGGTAACAAgtatgtcatgttcatatttttccaggaaatttcttttgtaagatgttaagtgtaagggaaaagaatcatacttatacacagctcctgtacattcgcggaa...
species | Zea mays |
transcript | GRMZM2G308570_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCACTGCTGGGACGCAGTCAGAGCTGTTCGGTGGAGCTGACA-G------ GTTTTTGAGAAGAGGAATATAATCATGGTTATCATGCAGAGCAGTGACTCTEST: gi|93283332|gb|EB675596.1|EB675596
genomic: TCACTGCTGGGACGCAGTCAGAGCTGTTCGGTGGAGCTGACAGGTAACAAgtatgtcatg ... tttgcttcagGTTTTTGAGAAGAGGAATATAATCATGGTTATCATGCAGAGCAGTGACTCT
EST: TCACTGCTGGGACGCAGTCAGAGCTGTTCGGTGGAGCTGACAGGTAACAA GTTTTTGAGAAGAGGAATATAATCATGGTTATCATGCAGAGCAGTGACTCTEST: gi|78111792|gb|DV530189.1|DV530189
genomic: TCACTGCTGGGACGCAGTCAGAGCTGTTCGGTGGAGCTGACAGGTAACAAgtatgtcatg ... tttgcttcagGTTTTTGAGAAGAGGAATATAATCATGGTTATCATGCAGAGCAGTGACTCT
EST: TCACTGCTGGGACGCAGTCAGAGCTGTTCGGTGGAGCTGACAGGTAACAA GTTTTTGAGAAGAGGAATATAATCATGGTTATCATGCAGAGCAGTGACTCTEST: gi|149102056|gb|EE287526.2|EE287526
genomic: TCACTGCTGGGACGCAGTCAGAGCTGTTCGGTGGAGCTGACAGGTAACAAgtatgtcatg ... tttgcttcagGTTTTTGAGAAGAGGAATATAATCATGGTTATCATGCAGAGCAGTGACTCT
EST: TCACTGCTGGGACGCAGTCAGAGCTGTTCGGTGGAGCTGACA-G------ GTTTTTGAGAAGAGGAATATAATCATGGTTATCATGCAGAGCAGTGACTCT
genomic: TCACTGCTGGGACGCAGTCAGAGCTGTTCGGTGGAGCTGACAGGTAACAAgtatgtcatg ... tttgcttcagGTTTTTGAGAAGAGGAATATAATCATGGTTATCATGCAGAGCAGTGACTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTCCAGCGGCGTGCCCCTCCGTCTTCCGTCACTCCAGATCCGAGGCAGTTCACTGCTGGGACGCAGTCAGAGCTGTTCGGTGGAGCTGACAGGTAACAAgtatgtcatgttcatatttttccaggaaatttcttttgtaagatgttaagtgtaagggaaaagaatcatacttatacacagctcctgtacattcgcggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaagaa