1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATACCAAGTACAGAGATTGATAAATCAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTAgtgagtttgcattcttgtaaaaaattaccttgaatttagctgttttttagcaatcttggtttcacagctatgctttgtgtttggttaacag
species | Zea mays |
transcript | GRMZM2G307906_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGCGAACAAATTCTTCTCTTACTGGGATCCTGANCA-GAAGGAATATCTA CTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAAACCAC-ACCEST: gi|21891584|gb|BQ744797.1|BQ744797
genomic: AGCGAACAAATTCTTCTCTTACTGGGATCCTGA-CAAGAAGGAATATCTAgtgagtttgc ... tggttaacagCTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAA-CCACCACC
EST: AACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTA CTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCAEST: gi|87157363|gb|DY402152.1|DY402152
genomic: AACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTAgtgagtttgc ... tggttaacagCTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCA
EST: CAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTA CTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCAEST: gi|18175729|gb|BM350937.1|BM350937
genomic: CAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTAgtgagtttgc ... tggttaacagCTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCA
EST: CAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTA CTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCAEST: gi|87157510|gb|DY402299.1|DY402299
genomic: CAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTAgtgagtttgc ... tggttaacagCTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCA
EST: CAGCGAACAAATTCTTCTCTTACTGGGATCTTGACAAGAAGGAATATCTA CTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCAEST: gi|74241997|gb|DT649911.1|DT649911
genomic: CAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTAgtgagtttgc ... tggttaacagCTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCA
EST: CAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTA CTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCAEST: gi|211294858|gb|FL410176.1|FL410176
genomic: CAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTAgtgagtttgc ... tggttaacagCTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCA
EST: CAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTA CTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCAEST: gi|23199784|gb|BU582349.1|BU582349
genomic: CAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTAgtgagtttgc ... tggttaacagCTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCA
EST: CAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTA CTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCAEST: gi|211298410|gb|FL370609.1|FL370609
genomic: CAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTAgtgagtttgc ... tggttaacagCTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCA
EST: CAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTA CTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCAEST: gi|78091777|gb|DV520151.1|DV520151
genomic: CAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTAgtgagtttgc ... tggttaacagCTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCA
EST: CAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTA CTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCAEST: gi|211397249|gb|FL247600.1|FL247600
genomic: CAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTAgtgagtttgc ... tggttaacagCTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCA
EST: GCGAACAAATTCTTCTCTTACTGGGATCCCTGACA-GAAAGGA-TATCTA CTGGCA-CTGTACTTEST: gi|78091778|gb|DV520152.1|DV520152
genomic: GCGAACAAATTCTTCTCTTACTGGGATCC-TGACAAGAA-GGAATATCTAgtgagtttgc ... tggttaacagCTG-CAACTGTACTT
EST: CAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTA CTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCAEST: gi|74241998|gb|DT649912.1|DT649912
genomic: CAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTAgtgagtttgc ... tggttaacagCTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCA
EST: CAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTA CTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCAEST: gi|74236877|gb|DT644791.1|DT644791
genomic: CAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTAgtgagtttgc ... tggttaacagCTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCA
EST: CAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTA CTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCAEST: gi|78024538|gb|DV492925.1|DV492925
genomic: CAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTAgtgagtttgc ... tggttaacagCTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCA
EST: CAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTA CTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCA
genomic: CAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTAgtgagtttgc ... tggttaacagCTGCAACTGTACTTCAAGCCAAGACCGCCAGAAGCTAATAAACCACCACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACCAAGTACAGAGATTGATAAATCAGCGAACAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATATCTAgtgagtttgcattcttgtaaaaaattaccttgaatttagctgttttttagcaatcttggtttcacagctatgctttgtgtttggttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA