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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGTTCACTTTCACAGCTATTAGAATATGGATTCTATCATGCAGATCCACACCCTGGAAATCTTTTGCGTACAGTTGATGGGAAATTAGCCTACTTAGgtaatggttatattttctatatcttcactaaagaatgcatgtttatagacttttgggttcccagattactgtcttgatcatcctgagtgctgccctttgt...

Basic information

species Zea mays
transcript GRMZM2G305007_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G305007_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os04g54790.1 (Oryza sativa), 5'ss of exon 10
TATTGTTCACTTTCACAGCTATTAGAATATGGATTCTATCATGCAGATCCACACCCTGGAAATCTTTTGCGTACAGTTGATGGGAAATTAGCCTACTTAGgtaatggttatatt-ttctatatcttcactaaagaatgcatgtttatagacttttgggttcccagattactgtcttgatcatcctgagtgctgccctttgt--------------------------------------------------
|| || |||||||| ||||| || ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||  |||| || |||||||||  || | || |||| | ||| |  | ||   | | || || |  | | ||||  |      ||| |  ||  ||   |     |||| ||||||                                                    
TACTGCTCACTTTCTCAGCTTTTGGAATATGGATTTTACCATGCAGATCCACATCCTGGAAATCTTTTGCGTACAGTTGATGGGAAGCTAGCGTATTTAGgtaataattgtgttattctgtttctgcctttaatgtttc-tgattttttagtcttgg--taatgagttagttcctaaatttactcatttgctaccctttacatgaatcttgttccattttaactatctgaaacattttgttctctatgtag

upper sequence: GRMZM2G305007_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA16G27500.1 (Glycine max), 5'ss of exon 10
TATTGTTCACTTTCACAGCTATTAGAATATGGATTCTATCATGCAGATCCACACCCTGGAAATCTTTTGCGTACAGTTGATGGGAAATTAGCCTACTTAGgtaat----ggttatattttctatatcttca---ctaaag------aatgcatgtttatagacttttgggtt--cccagattactgtcttgatcatcctgagtgctgccctttgt----------------------------------------------------------
|| || ||| |    || ||  | || | ||| ||||||||||||||||||||||||||||||||| | || |||  |||||| ||||| || || |||||||||    | ||  || ||  |||| |  |   ||   |        |  ||||||| | |  ||||  ||    | ||  | | |  ||||     | || |   | ||| |                                                           
TACTGCTCATTCAATCAACTTCTTGAGTGTGGGTTCTATCATGCAGATCCACACCCTGGAAATCTTCTTCGGACATATGATGGAAAATTGGCTTATTTAGgtaattgaagattgaatatttaatatttcaaattctttggtttcttggttgatgtttacatagatttgtcttgtttctgaggatt-taatgatagaaataagcgaaacacttggaataacttgttcatttcttgaatttaatggtgcattctttttcccttcttttgcaatag

upper sequence: GRMZM2G305007_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv18s0001g01620.t01 (Vitis vinifera), 5'ss of exon 10
TATTGTTCACTTTCACAGCTATTAGAATATGGATTCTATCATGCAGATCCACACCCTGGAAATCTTTTGCGTACAGTTGATGGGAAATTAGCCTACTTAGgtaatggttatattttctatatcttcactaaagaatgcatgtttatagacttttgggttcccagattactgtc-ttgatcatcctgagtgctgccctttgt
||  | ||| ||   || ||  | |||||||| ||||||||||| ||||||||||| ||||| ||| | ||||||  |||||| ||| |||| || |||||||    || || ||| ||| |  ||| |   | ||  ||  |   | |  ||    || | || ||  | |  |   |  | ||  |        |   |
TACAGCTCATTTAATCAACTTCTGGAATATGGGTTCTATCATGCGGATCCACACCCAGGAAACCTTCTTCGTACAAATGATGGAAAACTAGCTTATTTAGgtatgctttttagtttatatttgctcaatttggcataaataat-ggacatgttacaattgcaagttttttttagtcagtgcttctctgcttaaaaataatt