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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTCCAGATCCCATCCATGCCAGAAGTGAAGCATCATTCTCTTTCACTAGAGGGATTTATTTCTGTTGATGATGTTGATATTACACAAATCAAGTACAAgtaagaactctatccccaaacataacatattttgcttttttttgctgtgttttaagtaacatctaatttgttgtgttggatcttgtaataaataaaatat...

Basic information

species Zea mays
transcript GRMZM2G303752_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G303752_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g07080.1 (Oryza sativa), 5'ss of exon 9
TACTCCAGATCCCATCCATGCCAGAAGTGAAGCATCATTCTCTTTCACTAGAGGGATTTATTTCTGTTGATGATGTTGATATTACACAAATCAAGTACAAgtaagaactctatccccaaacataacatattttgcttttttttgctgtgttttaagtaacatctaatttgttgtgttggatcttgtaataaataaaatat--
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TACTCCAAATTCCATCTATGCCAGAAGTTAAGCACCATTCTCTTTCATTGGAAGGGTTTACTCCTGTTAAAGATGTCGATGTTACAAAAATCAAGTACAAgtaagcctgcaaacctaacatttcac-tctgttgccaattgtactattgcatcaacgcactactaatttgacaaattt-atattggtatattttatattaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60337021|gb|DN203994.1|DN203994
EST:     GAGGGATTTATTTCTGTTGATGATGTTGATATTACACAAATCAAGTACAA                         GGATAAAGCTCGAGAAAAACAACGCAAGAAGGCGCTGAAAAGGAAAGCAGA
genomic: GAGGGATTTATTTCTGTTGATGATGTTGATATTACACAAATCAAGTACAAgtaagaactc ... ttcactgcagGGATAAAGCTCGAGAAAAACAACGCAAGAAGGCGCTGAAAAGGAAAGCAGA