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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGCTAATTGCCACGAACTGGCCTTACTGGAACAGATCAGAGGGTGCGGATCATTTCTTTGTCACGCCACATGACTCTGGTGCTTGCTTCCATTATCAGgtataaacaccaccggtacatgaagtagctgtagcgtgcatttatctatgcttccattaataaagtttagatgctaatcaataatagatgagtactgaat...

Basic information

species Zea mays
transcript GRMZM2G301552_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G301552_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g70200.1 (Oryza sativa), 5'ss of exon 2
TGAGCTAATTGCCACGAACTGGCCTTACTGGAACAGATCAGAGGGTGCGGATCATTTCTTTGTCACGCCACATGACTCTGGTGCTTGCTTCCATTATCAGgtataaacaccaccggtacatgaagtagctgtagcgtgcatttatctatgcttccattaataaagtttagatgctaatcaataatagatgagtactgaat------
|||||| ||||| || || |||||||||||||| ||||||||||| || |||||||||||||| || |||||||||| ||| ||||||||||| ||||||||| |  ||| |   |||||  |  | ||||| |    |||||||   | |||   | |  ||| | | ||   | | || || |   | |||||||||       
TGAGCTGATTGCAACAAATTGGCCTTACTGGAATAGATCAGAGGGGGCTGATCATTTCTTTGTTACACCACATGACTTTGGCGCTTGCTTCCACTATCAGgtacatgcacaa---gtacaaaaccttgctgttggacacatttattcctcctttagtgagcaaattctggactttgagcattagt---ttagtactgaacacttaa

upper sequence: GRMZM2G301552_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA04G37920.1 (Glycine max), 5'ss of exon 2
TGAGCTAATTGCCACGAACTGGCCTTACTGGAACAGATCAGAGGGTGCGGATCATTTCTTTGTCACGCCACATGACTCTGGTGCTTGCTTCCATTATCAGgtataaacaccaccggtacatgaagtagctgtagcgtgcatttatctatgcttccattaataaagtttagatgctaatcaataatagatgagta-----ctgaat---------------------------------------------------------------
  |||| ||| |  | ||||||||||| ||||||||  |||| || || |||||||||||||| || || ||||||| ||| || |||||||||||||| |||  ||    |  |   | |        ||     | |||  |    |  ||| ||||| ||     | |   |      |  | | |||| |      || ||                                                               
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccgttttaattttgctattttcatc-actattagttctattaagaattcaaacaaattgtgtggtgtttggtgagaaggaccttggattttattcttcaatatgtacatggatattgtaacatgcacttttatcatgtttttccgttccag

upper sequence: GRMZM2G301552_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA06G17140.1 (Glycine max), 5'ss of exon 2
TGAGCTAATTGCCACGAACTGGCCTTACTGGAACAGATCAGAGGGTGCGGATCATTTCTTTGTCACGCCACATGACTCTGGTGCTTGCTTCCATTATCAGgtataaacaccaccggtacatgaagtagctgtagcgtgcatt--tatctatgcttccattaat----aaagtttagatgctaatcaataatagatgagtactgaat--------------------------------------------------------------
  |||| ||| |  | ||||||||||| ||||||||  |||| || || |||||||||||||| || || ||||||| ||| || |||||||||||||| |||  ||    |  |   |||        |||    |  ||   |||   | |||  |  |||    | |  ||   || |  |   | | | | ||  |  || |                                                              
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccattttaattttgttatttaaatcactattagttcttttaagaattcaaacaaattttgtggtttttggtgaca-aggaccatggattccactattaaagatgtacatggatattgtaacatgcacttttatcatgtttttttgttccag

upper sequence: GRMZM2G301552_T01 (Zea mays), 5'ss of exon 9
lower sequence: AT1G27440.1 (Arabidopsis thaliana), 5'ss of exon 2
TGAGCTAATTGCCACGAACTGGCCTTACTGGAACAGATCAGAGGGTGCGGATCATTTCTTTGTCACGCCACATGACTCTGGTGCTTGCTTCCATTATCAGgtataaacaccaccg-gtacatgaagtagctgtagcgtgcatttatctatgcttccattaataaagtt-tagatgctaatcaataatag---atgagtactgaat--
  | |||||  |  | || |||||||| |||||  |  | || || || ||||| ||||||||   ||| ||||||| ||| |||||||||||||||||||||  |  | | | |  | || |||  | || ||       ||| | ||||| |  | || |   ||  | | || | ||||| ||||     |||      |||  
ACAACTAATCTCATCAAATTGGCCTTATTGGAATCGGACTGAAGGAGCTGATCACTTCTTTGTTGTGCCCCATGACTTTGGAGCTTGCTTCCATTATCAGgta-gattatctctgcattcaggaacaaactctat------tttttatatgcattgaatactttggtggttgctgttcatcaagaataccctgtgatcttacaatga