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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGGCCGTACCCAAATCTTTAAGATCCATACACGCACCATGAACTGCGAGCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgctttgtggtttcagcagaatgtttgtgtttctgcttgattcaattgatttacttgaagactttgcgatagatgatcaggttctcacatagccttgctttgttactccag

Basic information

species Zea mays
transcript GRMZM2G181359_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g54340.1 (Oryza sativa), 5'ss of exon 9
GAGGGCCGTACCCAAATCTTTAAGATCCATACACGCACCATGAACTGCGAGCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttg-----ctttgtggtttcag-cagaatgtttgtgtttctgcttgattcaattgattt--acttgaagactttgcgatagatgatcaggttctcacatagccttgctttgttactccag
||||||||||||||||| || ||||| |||||||||||||||||||| ||||| ||||| ||||||||||| ||||| || |||||||||||||| |||||| | | |     |||||    |||   | |  || ||   | |    ||| ||    |  | |  || | || |       ||          ||||||||| |  | || |||| |  | |||
GAGGGCCGTACCCAAATATTCAAGATACATACACGCACCATGAACTGTGAGCGCGATATCCGTTTCGAGCTGCTGGCTCGCCTCTGCCCCAACTCAACTGgtaactggaagaactttgaaacttcgttctgggtggtttcttctagatttgtttgttatagtctccacctcaaaagcggataatgctaagctttgttctcacaaactcctg-tttgctgttacag

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 9
lower sequence: PP1S49_256V6.1 (Physcomitrella patens), 5'ss of exon 9
GAGGGCCGTACCCAAATCTTTAAGATCCATACACGCACCATGAACTGCGAGCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgctttgtggtttcagcagaatgtttgtgtttctgcttgattcaattgatttacttgaagactttgcgatagatgatcaggttctcacatagccttgctttgttactccag
||  | || |||||||| || ||||| ||||| || |||||||||   || ||||| |||||||||||||||||||| || || ||||| || || || |||    || ||  |  ||   ||  ||| ||||| || | | | | ||  ||   | |  | ||| |   |    |     ||   | | ||  |||   |||   |          
GAAAGTCGAACCCAAATTTTCAAGATTCATACTCGGACCATGAACACAGAACGAGACATTCGTTTCGAGCTTCTGGCTCGCCTTTGCCCTAATTCAACAGgt--tctgattctt--ttcttgct-aatttttgtatt-cagatcggttgtatccgtgt-ttagaatatgatattttcttgaatgtagctgtcggataagattggaat----------

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 9
lower sequence: PP1S152_13V6.2 (Physcomitrella patens), 5'ss of exon 9
GAGGGCCGTACCCAAATCTTTAAGATCCATACACGCACCATGAACTGCGAGCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgctttgtggtttcagcagaatgtttgtgtttctgcttgattcaattgatttacttgaagactttgcgatagatgatcaggttctcacatagccttgctttgttactccag
||  |||| ||||| || || ||||||||||| || ||||||||   ||||||||| |||||||||||||||||  | || || |||||||| || || |||      ||  ||  ||   |     | |   ||  |||   || |  | |||  ||  |    || ||||   | |    |||   | | |  |    ||               
GAAAGCCGAACCCAGATTTTCAAGATCCATACGCGAACCATGAATACCGAGCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatctacgtcattg-ggttaggtctggatgcatctatgtgttgaagttggctt-ttcacggaatttgacgttggctttcaa--ttttatgttcgtttaa-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149004351|gb|EE039049.2|EE039049
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|32857562|gb|CD997243.1|CD997243
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|67019132|gb|CO447881.1|CO447881
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|31363534|gb|CD447891.1|CD447891
EST:     GCGAGATATTCGTTTTGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|213175255|gb|FM185957.1|FM185957
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|84908648|gb|DW404526.1|DW404526
EST:     CTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: CTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|67021842|gb|CO450591.1|CO450591
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|6031320|gb|AW076177.1|AW076177
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|110202151|gb|EC884048.1|EC884048
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|5871373|gb|AW017844.1|AW017844
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|148933232|gb|EC876883.2|EC876883
EST:     GCGAGATATTCGTTTCGAGCTTTTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|5607920|gb|AI901587.1|AI901587
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCCCGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAACCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|148981607|gb|EE027765.2|EE027765
EST:     GCGAGATATTCGTTTCGAGCTTTTGGCACGGCTTTGCCCCAACTTTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|37375424|gb|CF624148.1|CF624148
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|60355431|gb|DN222404.1|DN222404
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|148952263|gb|EC898072.2|EC898072
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|67020716|gb|CO449465.1|CO449465
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATA-GGAGCGTCTG-ACANAANCCGGGATGT-TGC-ATTCCTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|60399891|gb|DN232701.1|DN232701
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|211115113|gb|FL138970.1|FL138970
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCC-AACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|149102255|gb|EE188154.2|EE188154
EST:     GCGAGATATTCGTTTCGAGCTTTTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|32849281|gb|CD988962.1|CD988962
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|37373749|gb|CF623190.1|CF623190
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|40334078|gb|CK368148.1|CK368148
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|60350810|gb|DN217783.1|DN217783
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|6654150|gb|AW267555.1|AW267555
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|60347007|gb|DN213980.1|DN213980
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGCATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|148928313|gb|EE284946.2|EE284946
EST:     GCGAGATATTCGTTTCGAGCTTTTGGCACGGTTTTGCCCCAACTTTACTG                         GAGCGGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|149107886|gb|EE292246.2|EE292246
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|211115112|gb|FL138969.1|FL138969
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|5706120|gb|AI941896.1|AI941896
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCCCGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAACCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|32836704|gb|CD976382.1|CD976382
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|31910877|gb|CD651643.1|CD651643
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|211114332|gb|FL138968.1|FL138968
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: gi|37376686|gb|CF624896.1|CF624896
EST:     GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG                         GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 396

GAGGGCCGTACCCAAATCTTTAAGATCCATACACGCACCATGAACTGCGAGCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGCCCGCAGGAAAACGGTGACAGAGAAGGATTTTCTCGATGCTGTCAATAA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 411

GAGGGCCGTACCCAAATCTTTAAGATCCATACACGCACCATGAACTGCGAGCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGCCCGCAGGAAAACGGTGACAGAGAAGGATTTTCTCGATGCTGTCAATAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 502

GAGGGCCGTACCCAAATCTTTAAGATCCATACACGCACCATGAACTGCGAGCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGCCCGCAGGAAAACGGTGACAGAGAAGGATTTTCTCGATGCTGTCAATAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 341

GAGGGCCGTACCCAAATCTTTAAGATCCATACACGCACCATGAACTGCGAGCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGCCCGCAGGAAAACGGTGACAGAGAAGGATTTTCTCGATGCTGTCAATAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGGCCGTACCCAAATCTTTAAGATCCATACACGCACCATGAACTGCGAGCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgctttgtggtttcagcagaatgtttgtgtttctgcttgattcaattgatttacttgaagactttgcgatagatgatcaggttctcacatagccttgctttgttactccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT