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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGCTCTAACAACAGCAGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagttttgatattttgtgtcatatcttgtattttcagtccatatcttgtatttagggcctgtttggttccttgcccaggcaaggttgccttgctt...

Basic information

species Zea mays
transcript GRMZM2G181151_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 9
GATTGCTCTAACAACAGCAGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagttttgatattttgtgtcatatcttgtattttcagtccatatcttgtatttagggcctgtttggttccttgcccaggcaaggttgccttgctt--
 ||||| || ||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||| || || ||||||||||   | |||  ||| || | | || |  | || |||   ||  | | || |||| |     | || |           | | ||   |    |  ||  
AATTGCACTGACAACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgctttt-tatcttttatgatgttgtatactttgtttctttctgttttatt-acctattcttagaccttaattttaaggaatcatatactaatttg

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA10G42940.2 (Glycine max), 5'ss of exon 9
GATTGCTCTAACAACAGCAGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagttttgatattttgtgtcatatcttgtattttcagtccatatcttgtatttagggcctgtttggttccttgcccagg---caaggttgccttgctt----------------------------------------------------------------------------------
 |||||||| || || || ||||||||||| ||||||||||| |||||||| ||||| ||  | ||||||||||| |||||||| || || ||||||||||||       || |  | || | |  | |     |          | ||   | | ||    ||| ||     | ||    | |    ||  ||| | | |||                                                                                  
TATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatttaccttcaactgttat-tagtttggaagaagcaacaaaaagataggggacttgaaaccttttataggctttaatgatgatttaaaattgacattcttttatgcctttggtttattcttggagtatgagaaataactgaaaatatttctataacaatttgcatgacacttgatcccgtag

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA09G38110.2 (Glycine max), 5'ss of exon 9
GATTGCTCTAACAACAGCAGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagttttga--tattttgtgtcatatcttgtattttcagtccatatcttgtatttagggcctgtttggttccttgcccaggcaaggttgccttgctt
 |||||||| || || || ||||||||||||||||||||||| |||||||| ||||| ||  | ||||||||||| |||||||| || || ||||||||||||  |       |  ||  || | | |||   ||       |    | |     |   ||   | | | | |   ||         |  ||| ||||| | 
TATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatgcaccaaaaactaacttttataataaggtggcaaaagaaaagaaaagagatgagtaat-cttttatagcctctattgggattatagtttccttgtt-

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA18G48280.1 (Glycine max), 5'ss of exon 9
GATTGCTCTAACAACAGCAGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagttttgatattttgtgtcatatcttgtattttcagtccatatcttgtatttagggcctgtt-tggttccttgcccaggcaaggttgccttgctt---
 |||||||| || || || ||||||||||||||||||||||| |||||||| ||||| ||  | || |||||||| |||||||| || || ||||||||||||  |    |  |  | || |   |      ||      ||   | |      ||       || || | ||  ||  |   | || ||   | | | ||   
TATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTAACTGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatgtacctaaaactattataataag----gtggcaaaagaaaagaaaagagatgggaaatcttttatagtctctatcattgccatgggatcatagtttcct

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 10
GATTGCTCTAACAACAGCAGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgta-tggagttttga-tattttgtgtcatatcttgtattttcagtccatatcttgtatttagggcctgttt--ggttccttgcccaggcaaggttgccttgctt
 |||||||| || || || ||||||||||| ||||||||||| ||||| || ||||| ||  | ||||| ||||| |||||||| || || |||||||||||| |  |  ||| | |||| |  ||        | |    ||    | ||     | ||    | | ||   | ||   ||   |    |  ||| |||    
TATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCACGTTCTTGTGATACTCACAGACATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatttacctttaactattgttagtttggaaaagaagcaacaaaa-agataggagacttgaaacattttatggatttaatgataattagaaattgacttt---

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 9
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 5'ss of exon 10
GATTGCTCTAACAACAGCAGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagttttgatattt-tgtgtcatatcttgtattttcagtccatatcttgtatttagggcctgtt-tggttccttgcccaggcaaggttgccttgctt
 || || || ||||| || || || ||||||||||||||||| |||||||| ||||||||  | ||||| ||||| || || || || || |||||||||||   ||     |||||||   ||   | |     ||| |    |  |    || ||     |||||   | ||   |  |   | | |     | | |   
TATCGCACTTACAACTGCTGAGTACTTGGCATATGAATGTGGCAAGCATGTCCTTGTCATTCTCACAGACATGAGTTCCTACGCCGATGCTCTTCGTGAGgt---gataaccgatatttgcatgctctgttcacaattcttgaactttgagatg-ataggaagcctgaaatagtgtttaacgttgactaatacccttag---

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 9
lower sequence: AT1G76030.1 (Arabidopsis thaliana), 5'ss of exon 9
GATTGCTCTAACAACAGCAGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagttttgatattttgtgtcatatcttgtattttcagtccatatcttgtatttagggcctgtttg-gttccttgcccaggcaaggttgccttgctt
 ||||| || |||||||| |||||| |||| |||||||||||||| || || ||||| || ||||| |||||||| |||||||| || || ||||||||||||    |     ||||||  |  |  |  | ||   || | | |||| | ||| |||    ||| ||   |||   |    ||     |   |  |    
AATTGCCCTCACAACAGCTGAATATCTGGCTTATGAATGTGGGAAACACGTCCTTGTTATATTGACGGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaaaatg----aatatttgataccggag-tagttcctttatttcataccatgtttttt---cctcttcatgtttgataataagattgagaaactgtag--

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 9
lower sequence: AT1G20260.1 (Arabidopsis thaliana), 5'ss of exon 9
GATTGCTCTAACAACAGCAGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagttttgatattttgtgtcatatcttgtattttcagtccatatcttgtatttagggcctgtttggttccttgcccaggcaaggttgccttgctt
 ||||| |||||||| || ||||||||||| ||||||||||| |||||||| ||||| || |||||||| ||||| ||||||||||| || ||||||||||||  ||||||   | |  | |||  ||| |   ||      | || |  ||| ||||| |   ||  |      |  |  | |  |  |          
AATTGCCCTAACAACCGCTGAATATTTGGCTTATGAATGTGGAAAGCATGTGCTTGTTATATTGACAGACATGAGTTCTTATGCAGATGCTCTTCGTGAGgtaatgagtttcactgtcctttgt-gtatgtcccat----gattcaaaatttg-atttaagctttgaataaaat-taacaaacgtgaactctag------

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 9
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 5'ss of exon 9
GATTGCTCTAACAACAGCAGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagttttgatattttgtgtcatatcttgtattttcagtccatatcttgtattta--gggcctgtttggttccttgcccaggcaag-gttgccttgctt
 |||||||| ||||| |||||||||||||| ||||| |||||||||||||| || || || || ||||||||||| ||||||||||| || ||||||||||||   | || |    | |||  |    |   |  | |  ||   |  |||| |  |||  |  | |   |  |        |||  |   |||   ||| | 
AATTGCTCTCACAACTGCAGAATATTTGGCTTATGAGTGTGGGAAGCATGTTCTAGTTATATTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAGgtaataaattctctgctattgaatt---ttcagggtctatagcatagttcttattattaccgtactttactaatataacaaacagatagtcgttagtttgata

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 9
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 9
GATTGCTCTAACAACAGCAGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagttttgatattttgtgtca-----tatcttgt-attttcagtccatatcttgtatttagggcctgtttggttccttgcccaggcaaggttgccttgctt
 |||||||| || || || |||||||| |||||||||||||| || ||||| ||||||||  | ||||||||||| ||||||||||| || ||||||||||||  || ||||  |  ||| |||||     |   |||| ||| ||  ||| |||              ||    |  |  |||||     ||  || |       
AATTGCTCTCACCACTGCTGAATATTTAGCATATGAATGTGGCAAACATGTTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAGgtaacgattttttctgcttt-tgtcaatgaatggtttgtgattgtctttccttataaaaaccaagataacttaaagactaattgcctttcaaaaattacac-----

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 9
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 5'ss of exon 8
GATTGCTCTAACAACAGCAGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggag-----ttttgatattttgtgtcatatcttgtattttcagtccatatcttgtatttagggcctgtttggttccttgcccaggcaaggttgccttgctt----------------------------------------------------------------------------------------
 || || || || || || ||||| |  || |||||||||||||||||||| || |||||| |||| |||||||| || |||||||| || || |||||||||          | || |    || |  | |    |   |||||||    || ||  | |  |    ||   || | |   ||    |  |  |    | | ||                                                                                        
AATCGCCCTTACTACTGCTGAATACTACGCTTATGAATGTGGGAAGCATGTCCTGGTCATCCTGACGGATATGAGTTCATATGCAGATGCGCTGCGTGAGgtacaagtgtttctcttaaagacttttcgcttggactcctttttcagaagttagctcctgtg-aaattctacatgctactccgcagttggtatctgaaatagtttttaagcaaatttgtaatctattcagttggtttttaattaagaccttcagtgtgctacaaattttttccactctcaattcttcaaatag

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 9
lower sequence: EFJ13375 (Selaginella moellendorffii), 5'ss of exon 8
GATTGCTCTAACAACAGCAGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagttttgatattttgtgtcatatcttgtattttcagt--ccatatcttgtatttagggcctgtttggttccttgcccaggcaaggttgccttgctt
||||||  | || || ||||||||| |||| ||||| || ||||| ||||| |||||||| ||||| || ||||| || ||||| || ||| | |||||||||||    |   || |||   ||  |   |   | ||    |  ||||  ||| | | |||                                        
GATTGCGTTGACGACGGCAGAATATCTGGCTTATGATTGCGGGAAACATGTGCTTGTCATTTTGACCGACATGAGTTCGTATGCGGATGCATTGCGTGAGgtatga---tcgtatgtttcaagtttttcatgagagttatgataaccatggctt-tgtgtag----------------------------------------

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 9
lower sequence: EFJ11911 (Selaginella moellendorffii), 5'ss of exon 8
GATTGCTCTAACAACAGCAGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagttttgatattttgtgtcatatcttgtattttcagtccatatcttgtatttagggcctgtttggttccttgcccaggcaaggttgccttgctt
||||||  | || || ||||| ||| |||| ||||| || ||||| ||||| |||||||| ||||| || ||||| || ||||| || ||| | ||||||||||||  | ||   | ||||  ||||      |||  | |  |||   ||| | | |||                                        
GATTGCGTTGACGACGGCAGAGTATCTGGCTTATGATTGCGGGAAACATGTGCTTGTCATTTTGACCGACATGAGTTCGTATGCGGATGCATTGCGTGAGgtatggtatgtttcaagtttg--tcatgagagctatgataa--ccagggctt-tgtgtag----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30307204|gb|CD001877.1|CD001877
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|6973468|gb|AW438162.1|AW438162
EST:     GTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: GTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|60352515|gb|DN219488.1|DN219488
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|33101769|gb|CF061729.1|CF061729
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|194716931|gb|FK934090.1|FK934090
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|31360502|gb|CD444859.1|CD444859
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|60394888|gb|DN227757.1|DN227757
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|67015926|gb|CO444675.1|CO444675
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|67028686|gb|CO457435.1|CO457435
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|26557381|gb|CA829616.1|CA829616
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|33101431|gb|CF061391.1|CF061391
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|32944615|gb|CF049434.1|CF049434
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|37401251|gb|CF637988.1|CF637988
EST:     ATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGA-                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: ATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|33094143|gb|CF054137.1|CF054137
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|32931582|gb|CF036394.1|CF036394
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT