1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGTGAGGCGATATTCCAGACTCACGAAAACTTGGAACATCTGGCTATGATGGAGAGGGTTCTTGGACCTTTGCCATACCATATGTTCAAGAGGGCAGAgtacgtttcatgcaattgtctcatatcatatgcttaagagggcagggttatctgaacatcagtgctgtgagatctggtcgatgtcttgtgcttattaatccttgtttgtag
species | Zea mays |
transcript | GRMZM2G179308_T03 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATGGAGGGGGTTCTTGGACCTTTGCCATACCATATGTTCAAGAGGGCAGA TCGGCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGGEST: gi|32787565|gb|CD936467.1|CD936467
genomic: ATGGAGAGGGTTCTTGGACCTTTGCCATACCATATGTTCAAGAGGGCAGAgtacgtttca ... ttgtttgtagTCGGCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGG
EST: ATGGAGAGGGTTCTTGGACCTTTGCCATACCATATGTTCAAGAGGGCAGA TCGGCACCCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGGEST: gi|45568628|gb|CK986157.1|CK986157
genomic: ATGGAGAGGGTTCTTGGACCTTTGCCATACCATATGTTCAAGAGGGCAGAgtacgtttca ... ttgtttgtagTCGGCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGG
EST: ATGGAGAGGGTTCTTGGACCTTTGCCGTACCATATGTTCAAGAGGGCAGA TCGGCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGGEST: gi|76015336|gb|DT942506.1|DT942506
genomic: ATGGAGAGGGTTCTTGGACCTTTGCCATACCATATGTTCAAGAGGGCAGAgtacgtttca ... ttgtttgtagTCGGCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGG
EST: ATGGAGAGGGTTCTTGGACCTTTGCCATACCATATGTTCAAGAGGGCAGA TCGGCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGGEST: gi|71756384|gb|DR954321.1|DR954321
genomic: ATGGAGAGGGTTCTTGGACCTTTGCCATACCATATGTTCAAGAGGGCAGAgtacgtttca ... ttgtttgtagTCGGCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGG
EST: ATGGAGAGGGTTCTTGGACCTTTGCCATACCATATGTTCAAGAGGGCAGA TCGGCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGGEST: gi|211191418|gb|FL472415.1|FL472415
genomic: ATGGAGAGGGTTCTTGGACCTTTGCCATACCATATGTTCAAGAGGGCAGAgtacgtttca ... ttgtttgtagTCGGCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGG
EST: ATGGAGAGGGTTCTTGGACCTTTGCCATACCATATGTTCAAGAGGGCAGA TCGGCACTCTGACAATTACATCAGAAAAGGACGCCTGAATTGGCCTGAGGGEST: gi|71434755|gb|DR815805.1|DR815805
genomic: ATGGAGAGGGTTCTTGGACCTTTGCCATACCATATGTTCAAGAGGGCAGAgtacgtttca ... ttgtttgtagTCGGCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGG
EST: ATGGAGAGGGTTCTTGGACCTTTGCCATACCATATGTTCAAGAGGGCAGA TCGGCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGGEST: gi|211241890|gb|FL451479.1|FL451479
genomic: ATGGAGAGGGTTCTTGGACCTTTGCCATACCATATGTTCAAGAGGGCAGAgtacgtttca ... ttgtttgtagTCGGCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGG
EST: ATGGAGAGGGTTCTTGGACCTTTGCCATACCATATGTTCAAGAGGGCAGA TCGGCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGGEST: gi|60357877|gb|DN224850.1|DN224850
genomic: ATGGAGAGGGTTCTTGGACCTTTGCCATACCATATGTTCAAGAGGGCAGAgtacgtttca ... ttgtttgtagTCGGCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGG
EST: ATGGAGAGGGTTCTTGGACCTTTGCCATACCATATGTTCAAGAGGGCAGA TCGGCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGGEST: gi|33096467|gb|CF056461.1|CF056461
genomic: ATGGAGAGGGTTCTTGGACCTTTGCCATACCATATGTTCAAGAGGGCAGAgtacgtttca ... ttgtttgtagTCGGCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGG
EST: ATGGAGAGGGTTCTTGGACCTTTGCCATACCATATGTTCAAGAGGGCAGA TCGGCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGGEST: gi|60347445|gb|DN214418.1|DN214418
genomic: ATGGAGAGGGTTCTTGGACCTTTGCCATACCATATGTTCAAGAGGGCAGAgtacgtttca ... ttgtttgtagTCGGCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGG
EST: ATGGAGAGGGTTCTTGGACCTTTGCCATACCATATGTTCAAGAGGGCAGA TCGGCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGGEST: gi|166414524|gb|EG248328.1|EG248328
genomic: ATGGAGAGGGTTCTTGGACCTTTGCCATACCATATGTTCAAGAGGGCAGAgtacgtttca ... ttgtttgtagTCGGCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGG
EST: ACCTTTGCCGTACCATATGTTCAAGAGGGCAGA TCGGCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGGGGG
genomic: ACCTTTGCCATACCATATGTTCAAGAGGGCAGAgtacgtttca ... ttgtttgtagTCGGCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGAGGCGATATTCCAGACTCACGAAAACTTGGAACATCTGGCTATGATGGAGAGGGTTCTTGGACCTTTGCCATACCATATGTTCAAGAGGGCAGAgtacgtttcatgcaattgtctcatatcatatgcttaagagggcagggttatctgaacatcagtgctgtgagatctggtcgatgtcttgtgcttattaatccttgtttgtag
- - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG