Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGTTGGTTAGCAAAGGTGTCATAAAGCTAGCAGACTTTGGTCTTGCAAGGGAAGTCTCATCATTGCCACCATATACAGAATATGTCTCAACTCGCTGgttagcactgttcactcttcactagacaccaaaataaaatgaatctgtcttatcttttgttaatccccatgtttgaatgtcttag

Basic information

species Zea mays
transcript GRMZM2G178822_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G178822_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g47220.2 (Oryza sativa), 5'ss of exon 9
ATCTGTTGGTTAGCAAAGGTGTCATAAAGCTAGCAGACTTTGGTCTTGCAAGGGAAGTCTCATCATTGCCACCATATACAGAATATGTCTCAACTCGCTGgttagcactgttcactcttcactagacaccaaaataaaatgaatctgtcttatcttttgttaatccccatgt--ttgaatgtcttag
|||||||||||||||||| |||||||||||| || |||||||||||||||||||||||  ||||  |||||||||| ||||||||||| |||||||||||||||| |    ||  |  || |   ||||    | | ||      | ||||   |  |||| |||| |||||  |||||  ||| ||
ATCTGTTGGTTAGCAAAGATGTCATAAAGCTGGCGGACTTTGGTCTTGCAAGGGAAGTTACATCCGTGCCACCATACACAGAATATGTGTCAACTCGCTGgttagtagcactc--tactcgc---acacgtggacacaaatcccttttctttgttaatgttgatccacatgtgtttgaacatctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60345317|gb|DN212290.1|DN212290
EST:     AGGGAAGTCTCATCATTGCCACCATATACAGAATATGTCTCAACTCGCTG                         GTATCGGGCACCAGAAGTCTTGCTCCAGTCATCTGCTTATGATTCTGCAGT
genomic: AGGGAAGTCTCATCATTGCCACCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... aatgtcttagGTATCGGGCACCAGAAGTCTTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: gi|31361016|gb|CD445373.1|CD445373
EST:     AGGGAAGTCTCATCATTGCCACCATATACAGAATATGTCTCAACTCGCTG                         GTATCGGGCACCAGAAGTCTTGCTCCAGTCATCTGCTTATGATTCTGCAGT
genomic: AGGGAAGTCTCATCATTGCCACCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... aatgtcttagGTATCGGGCACCAGAAGTCTTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: gi|60352824|gb|DN219797.1|DN219797
EST:     AGGGAAGTCTCATCATTGCCACCATATACAGAATATGTCTCAACTCGCTG                         GTATCGGGCACCAGAAGTCTTGCTCCAGTCATCTGCTTATGATTCTGCAGT
genomic: AGGGAAGTCTCATCATTGCCACCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... aatgtcttagGTATCGGGCACCAGAAGTCTTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: gi|211493408|gb|FL041695.1|FL041695
EST:     AGGGAAGTCTCATCATTGCCACCATATACAGAATATGTCTCAACTCGCTG                         GTATCGGGCACCAGAAGTCTTGCTCCAGTCATCTGCTTATGATTCTGCAGT
genomic: AGGGAAGTCTCATCATTGCCACCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... aatgtcttagGTATCGGGCACCAGAAGTCTTGCTCCAGTCATCTGCTTATGATTCTGCAGT