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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCTGAAGCCCTTATTCCTCCAGCAGGGGCTCGTGTTATGTCCCTAACTGATGGTCTCTCCAAGgtgattgacagaactgccagtttagatatgcatttaattattgagttatgttctgagccgattcatattttttctggttacctgattactgtcctctatacatgtaatgtgatgacttctgttttggtgatag

Basic information

species Zea mays
transcript GRMZM2G177970_T03
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G177970_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g54020.1 (Oryza sativa), 5'ss of exon 10
GTTCCTGAAGCCCTTATTCCTCCAGCAGGGGCTCGTGTTATGTCCCTAACTGATGGTCTCTCCAAGgtgattgacagaactgccagtttagatatgcatttaattattgagttatgttctgagccgattcatattttttctggttacctgattactgtcctctatacatgtaatgtgatgacttctgttttggtgatag
||||||||||||||||| ||||||||||||||||||||||||||| |||| || ||||||||||||||  ||         ||||   |   |||   ||||||  |      |     |||  | | |   | |||||   ||||    ||||||      |||   || | ||| || ||  |              
GTTCCTGAAGCCCTTATACCTCCAGCAGGGGCTCGTGTTATGTCCTTAACCGACGGTCTCTCCAAGgtagtta--------gccatactcattatcattttaatcctgatcacaaaaaatgaaactactaggactttttt--gttattaaattact------tat---tgaagtgtcattacacc--------------

upper sequence: GRMZM2G177970_T01 (Zea mays), 5'ss of exon 10
lower sequence: AT2G25840.2 (Arabidopsis thaliana), 5'ss of exon 8
GTTCCTGAAGCCCTTATTCCTCCAGCAGGGGCTCGTGTTATGTCCCTAACTGATGGTCTCTCCAAGgtgattgacagaactgccagtttagatatgcatttaattattgagttatgttctgagccgattcatattttttctggttacctgattactg-tcctctatacatgtaatgtgatgacttctgttttggtgatag
 | || ||| | || || || | ||| || |||||||||||||| || ||||||||||| ||||||||  |      |  |     || | |  | | || |  | |   || || |  |    |  ||  |   ||     ||| | | | || || || || ||| ||  ||                          
ATACCAGAACCACTCATACCACAAGCTGGAGCTCGTGTTATGTCTCTTACTGATGGTCTTTCCAAGgtagt------atgttttcattcacagctactttaaggtttctggtcatttattttttc--tttctgcattcagcagttgcgtcactattggtcttcaatagataaaa--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76012104|gb|DT939274.1|DT939274
EST:     TTCCTCCAGCAGGGGCTCGTGTTATGTCCCTAACTGATGGTCTCTCCAAG                         ATGTCCAAGTCTGCTCCTTCAGACCAGTCTCGTATTAACCTTCTTGACCCA
genomic: TTCCTCCAGCAGGGGCTCGTGTTATGTCCCTAACTGATGGTCTCTCCAAGgtgattgaca ... ttggtgatagATGTCCAAGTCTGCTCCTTCAGACCAGTCTCGTATTAACCTTCTTGACCCA
EST: gi|78120427|gb|DV538811.1|DV538811
EST:     TTCCTCCAGCAGGGGCTCGTGTTATGTCCCTAACTGATGGTCTCTCCAAG                         ATGTCCAAGTCTGCTCCTTCAGACCAGTCTCGTATTAACCTTCTTGACCCA
genomic: TTCCTCCAGCAGGGGCTCGTGTTATGTCCCTAACTGATGGTCTCTCCAAGgtgattgaca ... ttggtgatagATGTCCAAGTCTGCTCCTTCAGACCAGTCTCGTATTAACCTTCTTGACCCA