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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGGGGGTTTGCTATTTAAGgtatgcaaaatgtcatgcacatacacaatttcacatccttctaagttatctatactatacttagattagagtaccttctggtttgattgtttag

Basic information

species Zea mays
transcript GRMZM2G177970_T02
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32944158|gb|CF048977.1|CF048977
EST:     AGGGAGAGGGGGTTTGCTATTTAAG                         GTTCCTGAAGCCCTTATTCCTCCAGCAGGGGCTCGTGTTATGTCCCTAACT
genomic: AGGGAGAGGGGGTTTGCTATTTAAGgtatgcaaaa ... gattgtttagGTTCCTGAAGCCCTTATTCCTCCAGCAGGGGCTCGTGTTATGTCCCTAACT
EST: gi|71449704|gb|DR830754.1|DR830754
EST:     AGGGAGAGGGGGTTTGCTATTTAAG                         GTTCCTGAAGCCCTTATTCCCTCC-GCAGGGGCTCGTGTTATGTCCCTAAC
genomic: AGGGAGAGGGGGTTTGCTATTTAAGgtatgcaaaa ... gattgtttagGTTCCTGAAGCCCTTATTCC-TCCAGCAGGGGCTCGTGTTATGTCCCTAAC
EST: gi|50331394|gb|CO526520.1|CO526520
EST:     AGGGAGAGGGGGTTTGCTATTTAAG                         GTTCCTGAAGCCCTTATTCCTCCAGCA
genomic: AGGGAGAGGGGGTTTGCTATTTAAGgtatgcaaaa ... gattgtttagGTTCCTGAAGCCCTTATTCCTCCAGCA
EST: gi|71449703|gb|DR830753.1|DR830753
EST:     AGGGAGAGGGGGTTTGCTATTTAAG                         GTTCCTGAAGCCCTTATTCCTCCAGCAGGGGCTCGTGTTATGTCCCTAACT
genomic: AGGGAGAGGGGGTTTGCTATTTAAGgtatgcaaaa ... gattgtttagGTTCCTGAAGCCCTTATTCCTCCAGCAGGGGCTCGTGTTATGTCCCTAACT
EST: gi|32930432|gb|CF035244.1|CF035244
EST:     AGGGAGAGGGGGTTTGCTATTTAAG                         GTTCCTGAAGCCCTTATTCCTCCAGCAGGGGCTCGTGTTATGTCCCTAACT
genomic: AGGGAGAGGGGGTTTGCTATTTAAGgtatgcaaaa ... gattgtttagGTTCCTGAAGCCCTTATTCCTCCAGCAGGGGCTCGTGTTATGTCCCTAACT
EST: gi|32930572|gb|CF035384.1|CF035384
EST:     AGGGAGAGGGGGTTTGCTATTTAAG                         GTTCCTGAAGCCCTTATTCCTCCAGCAGGGGCTCGTGTTATGTCCCTAACT
genomic: AGGGAGAGGGGGTTTGCTATTTAAGgtatgcaaaa ... gattgtttagGTTCCTGAAGCCCTTATTCCTCCAGCAGGGGCTCGTGTTATGTCCCTAACT
EST: gi|78120427|gb|DV538811.1|DV538811
EST:     GGAGAGGGGGTTTGCTATTTAAG                         GTTCCTGAAGCCCTTATTCCTCCAGCAGGGGCTCGTGTTATGTCCCTAACT
genomic: GGAGAGGGGGTTTGCTATTTAAGgtatgcaaaa ... gattgtttagGTTCCTGAAGCCCTTATTCCTCCAGCAGGGGCTCGTGTTATGTCCCTAACT