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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGCCCAAGTACAAGCAGGCCAAGATCAGGCTGCGCAAGGCCGGCGACCTCTACAACCTCACCAAGGACAAGACCGACTACGTCTGGTACACCTCCAGgtagttattgcttcagattaaagcttcaagatggtaggtagtgtgggtgttctgagtgtcgatcgatctcgacaacaacag

Basic information

species Zea mays
transcript GRMZM2G175779_T02
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78179084|gb|DV549457.1|DV549457
EST:     CTCTACAACCTCACCAAGGACAAGACCGACTACGTCTGGTACACCTCCAG                         CTTCAAGTTGGAGGCGGACGACATGCCGATCCGCAGCGACATCAAGACAGT
genomic: CTCTACAACCTCACCAAGGACAAGACCGACTACGTCTGGTACACCTCCAGgtagttattg ... acaacaacagCTTCAAGTTGGAGGCGGACGACATGCCGATCCGCAGCGACATCAAGACAGT
EST: gi|76920516|gb|DV168211.1|DV168211
EST:     CTCTACAACCTCACCAAGGACAAGACCGACTACGTCTGGTACACCTCCAG                         CTTCAAGTTGGAGGCGGACGACATGCCGATCCGCAGCGACATCAAGACAGT
genomic: CTCTACAACCTCACCAAGGACAAGACCGACTACGTCTGGTACACCTCCAGgtagttattg ... acaacaacagCTTCAAGTTGGAGGCGGACGACATGCCGATCCGCAGCGACATCAAGACAGT
EST: gi|8551676|gb|BE128847.1|BE128847
EST:     CTCTACAACCTCACCAAGGACAAGACCGACTACGTCTGGTACACCTCCAG                         CTTCAAGTTGGAGGCGGACGACATGCCGATCCGCAGCGACATCAAGACAGT
genomic: CTCTACAACCTCACCAAGGACAAGACCGACTACGTCTGGTACACCTCCAGgtagttattg ... acaacaacagCTTCAAGTTGGAGGCGGACGACATGCCGATCCGCAGCGACATCAAGACAGT
EST: gi|12047076|gb|BF729215.1|BF729215
EST:     CTCTACAACCTCACCAAGGACAAGACCGACTACGTCTGGTACACCTCCAG                         CTTCAAGTTGGAGGCGGACGACATGCCGATCCGCAGCGACATCAAGACAGT
genomic: CTCTACAACCTCACCAAGGACAAGACCGACTACGTCTGGTACACCTCCAGgtagttattg ... acaacaacagCTTCAAGTTGGAGGCGGACGACATGCCGATCCGCAGCGACATCAAGACAGT
EST: gi|76281440|gb|DV021008.1|DV021008
EST:     CTCTACAACCTCACCAAGGACAAGACCGACTACGTCTGGTACACCTCCAG                         CTTCAAGTTGGAGGCGGACGACATGCCGATCCGCAGCGACATCAAGACAGT
genomic: CTCTACAACCTCACCAAGGACAAGACCGACTACGTCTGGTACACCTCCAGgtagttattg ... acaacaacagCTTCAAGTTGGAGGCGGACGACATGCCGATCCGCAGCGACATCAAGACAGT