1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GAAAGATAGTTAACCCCCGTATCATCCTGTTGGACTGCCCTGTTGAGTATAAGAAAGGAGAAAATCAGACCAACGCTGAATTGATGAAGGAAGAAGATTGgtaagagatgtccatgtaccacaatgatcttgctgtgcatgcatagttttagagtaatttggtagaattgtaaggtatattatgtggtgaactttattgcag
species | Zea mays |
transcript | GRMZM2G175510_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AAGAAAGGAGAAAATCAGACCAACGCTGAATTGATGAAGGAAGAAGATTG GCAGGTTCTCCTAGAGATGGAGGAAGAATATATAAAGAACCTTTGCGCTCAEST: gi|31360791|gb|CD445148.1|CD445148
genomic: AAGAAAGGAGAAAATCAGACCAACGCTGAATTGATGAAGGAAGAAGATTGgtaagagatg ... tttattgcagGCAGGTTCTCCTAGAGATGGAGGAAGAATATATAAAGAACCTTTGCGCTCA
EST: AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTG GCAGGTTCTCCTAGAGATGGAGGAAGAATATATAAAGAACCTTTGCGCTCAEST: gi|33093522|gb|CF053516.1|CF053516
genomic: AAGAAAGGAGAAAATCAGACCAACGCTGAATTGATGAAGGAAGAAGATTGgtaagagatg ... tttattgcagGCAGGTTCTCCTAGAGATGGAGGAAGAATATATAAAGAACCTTTGCGCTCA
EST: AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTG GCAGGTTCTCCTAGAGATGGAGGAAGAATATATAAAGAACCTTTGCGCTCAEST: gi|32932045|gb|CF036857.1|CF036857
genomic: AAGAAAGGAGAAAATCAGACCAACGCTGAATTGATGAAGGAAGAAGATTGgtaagagatg ... tttattgcagGCAGGTTCTCCTAGAGATGGAGGAAGAATATATAAAGAACCTTTGCGCTCA
EST: AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTG GCAGGTTCTCCTAGAGATGGAGGAAGAATATATAAAGAACCTTTGCGCTCAEST: gi|32930502|gb|CF035314.1|CF035314
genomic: AAGAAAGGAGAAAATCAGACCAACGCTGAATTGATGAAGGAAGAAGATTGgtaagagatg ... tttattgcagGCAGGTTCTCCTAGAGATGGAGGAAGAATATATAAAGAACCTTTGCGCTCA
EST: AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTG GCAGGTTCTCCTAGAGATGGAGGAAGAATATATAAAGAACCTTTGCGCTCAEST: gi|24934892|gb|CA453110.1|CA453110
genomic: AAGAAAGGAGAAAATCAGACCAACGCTGAATTGATGAAGGAAGAAGATTGgtaagagatg ... tttattgcagGCAGGTTCTCCTAGAGATGGAGGAAGAATATATAAAGAACCTTTGCGCTCA
EST: ACCAACGCTGAATTGATGAAGGAAGAAGATTG GCAGGTTCTCCTAGAGATGGAGGAAGAATATATAAAGAACCTTTGCGCTCAEST: gi|32934453|gb|CF039265.1|CF039265
genomic: ACCAACGCTGAATTGATGAAGGAAGAAGATTGgtaagagatg ... tttattgcagGCAGGTTCTCCTAGAGATGGAGGAAGAATATATAAAGAACCTTTGCGCTCA
EST: AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTG GCAGGTTCTCCTAGAGATGGAGGAAGAATATATAAAGAACCTTTGCGCTCA
genomic: AAGAAAGGAGAAAATCAGACCAACGCTGAATTGATGAAGGAAGAAGATTGgtaagagatg ... tttattgcagGCAGGTTCTCCTAGAGATGGAGGAAGAATATATAAAGAACCTTTGCGCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGATAGTTAACCCCCGTATCATCCTGTTGGACTGCCCTGTTGAGTATAAGAAAGGAGAAAATCAGACCAACGCTGAATTGATGAAGGAAGAAGATTGgtaagagatgtccatgtaccacaatgatcttgctgtgcatgcatagttttagagtaatttggtagaattgtaaggtatattatgtggtgaactttattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG