Sequence
atgc intronic sequence ATGC exonic sequenceTTTGGAAGTGGTTCAATACCAACACATCTTGTTGGGGCTGCTTTGCTTAGAGGAGAGTGGAAGGTTGCTGTAAACTTGATTCTTGATCCAAGGGAAGGAGatatcctacaaatattttatatgtgtccaaattaggagtttgtattcagtcttgccagcttttgtttaaacataactaagtccgtac
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G173137_T02 (Zea mays), 5'ss of exon 9
lower sequence: AT3G04820.1 (Arabidopsis thaliana), 5'ss of exon 10
TTTGGAAGTGGTTCAATACCAACACATCTTGTTGGGGCTGCTTTGCTTAGAGGAGAGTGGAAGGTTGCTGTAAACTTGATTCTTGATCCAAGGGAAGGAGatatcctacaaatattttatatgtgtccaaattaggagtttgtattcagtcttgccagcttttgtttaaacataactaagtccgtac--------------------------------------
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TTTGGAAGTGGTTCAGTACCAACCCACCATGTAGGAGCTGCACTATTGAAAGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTGatatcctttta-catgaccta-gtctcagctttaattgctaatccctcttaataccatatttggctctacgaaaataaaggacgcagcattgcatagtttttcttgactttaagattctttttac
upper sequence: GRMZM2G173137_T02 (Zea mays), 5'ss of exon 9
lower sequence: Vv14s0030g01850.t01 (Vitis vinifera), 5'ss of exon 5
TTTGGAAGTGGTTCAATACCAACACATCTTGTTGGGGCTGCTTTGCTTAGAGGAGAGTGGAAGGTTGCTGTAAACTTGATTCTTGATCCAAGGGAAGGAGatatcctacaaatatttt-atatgtgtccaaattaggagtttgtattcagtcttgccagcttttgtttaaacataactaagtccgtac--------------------------------------------------------------------------
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-------------CTGTGCCAACTCACCTTATTGGAGCTGCATTACTCAGAGGAGAGTGGGAAACTGCTGTGAGCTTGATTCTGGATCCAAGAGAAGGGGATATCCTTTTATTgtttccatatttgtgaagataat--ccttttcatcattaaacacatttttagctcaaa--tagtttgttgcatgcagctctaatgcaacatcaacatgatgaatacttgtttttcttaacatagttgacatacaaagggatgcgataagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211231092|gb|FL345106.1|FL345106EST: AGGAGAGTGGAAGGTTGCTGTAAACTTGATTCTTGATCCAAGGGAAGGAG AGCGTGATGACATCAATGAGGTGCGCAAACGTTACAAAGAACATGGTGACA
genomic: AGGAGAGTGGAAGGTTGCTGTAAACTTGATTCTTGATCCAAGGGAAGGAGatatcctaca ... aagtccgtacAGCGTGATGACATCAATGAGGTGCGCAAACGTTACAAAGAACATGGTGACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTGGAAGTGGTTCAATACCAACACATCTTGTTGGGGCTGCTTTGCTTAGAGGAGAGTGGAAGGTTGCTGTAAACTTGATTCTTGATCCAAGGGAAGGAGatatcctacaaatattttatatgtgtccaaattaggagtttgtattcagtcttgccagcttttgtttaaacataactaagtccgtac
- - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG