1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TGAATTGCCGGAATTCCTTGGTGGCACTTGTACCTGTCCTGAATACGGAGGCTGCCTTAAGGCTGAAAAGGGACCATGGAAGGACCCAAACATACTTAAGgcatgtatcattagatactttttttgatcctcctattatttgttttttgctaactacaaagtataaccttgtcattctcatgtataatgtatttatcatttgttacccattgtactgataccag
species | Zea mays |
transcript | GRMZM2G171354_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCTGCCTTAAGGCTGAAAAGGGACCATGGAAGGACCCAAACATACTTAAG ATAGTCCAAAGTGGTGAGGTTCATTGTGCTCGTCAAATTGTAACTATTTCCEST: gi|160481332|gb|EY254266.1|EY254266
genomic: GCTGCCTTAAGGCTGAAAAGGGACCATGGAAGGACCCAAACATACTTAAGgcatgtatca ... ctgataccagATAGTCCAAAGTGGTGAGGTTCATTGTGCTCGTCAAATTGTAACTATTTCC
EST: GCTGCGTTAAGGCTGAAAAGGGACCATGGAAGGACCCAAACATACTTAAG ATAGTCCAAAGTGGTGAGGTTCATTGTGCTCGTCAAATTGTAACTATTTCCEST: gi|71447517|gb|DR828567.1|DR828567
genomic: GCTGCCTTAAGGCTGAAAAGGGACCATGGAAGGACCCAAACATACTTAAGgcatgtatca ... ctgataccagATAGTCCAAAGTGGTGAGGTTCATTGTGCTCGTCAAATTGTAACTATTTCC
EST: GCTGCCTTAAGGCTGAAAAGGGACCATGGAAGGACCCAAACATACTTAAG ATAGTCCAAAGTGGTGAGGTTCATTGTGCTCGTCAAATTGTAACTATTTCCEST: gi|6194954|gb|AW147058.1|AW147058
genomic: GCTGCCTTAAGGCTGAAAAGGGACCATGGAAGGACCCAAACATACTTAAGgcatgtatca ... ctgataccagATAGTCCAAAGTGGTGAGGTTCATTGTGCTCGTCAAATTGTAACTATTTCC
EST: CCCAAACATACTTAAG ATAGTCCAAAGTGGTGAGGTTCATTGTGCTCGTCAAATTGTAACTATTTCCEST: gi|211297305|gb|FK975032.1|FK975032
genomic: CCCAAACATACTTAAGgcatgtatca ... ctgataccagATAGTCCAAAGTGGTGAGGTTCATTGTGCTCGTCAAATTGTAACTATTTCC
EST: GCTGCCTTAAGGCTGAAAAGGGACCATGGAAGGACCCAAACATACTTAAG ATAGTCCAAAGTGGTGAGGTTCATTGTGCTCGTCAAATTGTAACTATTTCCEST: gi|6695723|gb|AW288801.1|AW288801
genomic: GCTGCCTTAAGGCTGAAAAGGGACCATGGAAGGACCCAAACATACTTAAGgcatgtatca ... ctgataccagATAGTCCAAAGTGGTGAGGTTCATTGTGCTCGTCAAATTGTAACTATTTCC
EST: CCCAAACATACTTAAG ATAGTCCAAAGTGGTGAGGTTCATTGTGCTCGTCAAATTGTAACTATTTCC
genomic: CCCAAACATACTTAAGgcatgtatca ... ctgataccagATAGTCCAAAGTGGTGAGGTTCATTGTGCTCGTCAAATTGTAACTATTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAATTGCCGGAATTCCTTGGTGGCACTTGTACCTGTCCTGAATACGGAGGCTGCCTTAAGGCTGAAAAGGGACCATGGAAGGACCCAAACATACTTAAGgcatgtatcattagatactttttttgatcctcctattatttgttttttgctaactacaaagtataaccttgtcattctcatgtataatgtatttatcatttgttacccattgtactgataccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG