Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTGTATAACATTCTTGACTGGCCTACCAAACCAAATTCAAATCTAGTTGTTATAGgtaactaaactattcttccattttgtccttacccttaccttttactcaccccttgtctgttttgccatggttgcag

Basic information

species Zea mays
transcript GRMZM2G168249_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168249_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os06g08790.1 (Oryza sativa), 5'ss of exon 9
GTGTTGTATAACATTCTTGACTGGCCTACCAAACCAAATTCAAATCTAGTTGTTATAGgtaactaaactattcttccattttgtccttaccctta-----ccttttactcaccccttgtctgttttgccatggttgcag
||| |||||||||||||||||||||| ||||  ||||||||||| |||||||| ||||||| ||| ||| || ||   ||||     |    |||     ||||||| | || | ||| |||||      ||   ||||
GTGCTGTATAACATTCTTGACTGGCCCACCAGGCCAAATTCAAACCTAGTTGTCATAGgtacctatacttttgttt-gttttacgtgtgattttagatggccttttaattactctttggctgttac----tgaacgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32931679|gb|CF036491.1|CF036491
EST:     TAACATTCTTGACTGGCCTACCAAACCAAATTCAAATCTAGTTGTTATAG                         GTATAGCAAACACAATGGATCTTCCAGAAAAGTTATTGCCTCGTATATCAA
genomic: TAACATTCTTGACTGGCCTACCAAACCAAATTCAAATCTAGTTGTTATAGgtaactaaac ... atggttgcagGTATAGCAAACACAATGGATCTTCCAGAAAAGTTATTGCCTCGTATATCAA
EST: gi|15209030|gb|BI430914.1|BI430914
EST:     TGGCCTACCAAACCAAATTCAAATCTAGTTGTTATAG                         GTATAGCAAACACAATGGATCTTCCAGAAAAGTTATTGCCTCGTATATCAA
genomic: TGGCCTACCAAACCAAATTCAAATCTAGTTGTTATAGgtaactaaac ... atggttgcagGTATAGCAAACACAATGGATCTTCCAGAAAAGTTATTGCCTCGTATATCAA
EST: gi|15209031|gb|BI430915.1|BI430915
EST:     TGGCCTACCAAACCAAATTCAAATCTAGTTGTTATAG                         GTATAGCAAACACAATGGATCTTCCAGAAAAGTTATTGCCTCGTATATCAA
genomic: TGGCCTACCAAACCAAATTCAAATCTAGTTGTTATAGgtaactaaac ... atggttgcagGTATAGCAAACACAATGGATCTTCCAGAAAAGTTATTGCCTCGTATATCAA
EST: gi|60348765|gb|DN215738.1|DN215738
EST:     TAACATTCTTGACTGGCCTACCAAACCAAATTCAAATCTAGTTGTTATAG                         GTATAGCAAACACAATGGATCTTCCAGAAAAGTTATTGCCTCGTATATCAA
genomic: TAACATTCTTGACTGGCCTACCAAACCAAATTCAAATCTAGTTGTTATAGgtaactaaac ... atggttgcagGTATAGCAAACACAATGGATCTTCCAGAAAAGTTATTGCCTCGTATATCAA
EST: gi|211040609|gb|FL332006.1|FL332006
EST:     TAACATTCTTGACTGGCCTACCAAACCAAATTCAAATCTAGTTGTTATAG                         GTATAGCAAACACAATGGATCTTCCAGAWAAGTTATTGCCTCGTATATCAA
genomic: TAACATTCTTGACTGGCCTACCAAACCAAATTCAAATCTAGTTGTTATAGgtaactaaac ... atggttgcagGTATAGCAAACACAATGGATCTTCCAGAAAAGTTATTGCCTCGTATATCAA
EST: gi|60344624|gb|DN211597.1|DN211597
EST:     TAACATTCTTGACTGGCCTACCAAACCAAATTCAAATCTAGTTGTTATAG                         GTATAGCAAACACAATGGATCTTCCAGAAAAGTTATTGCCTCGTATATCAA
genomic: TAACATTCTTGACTGGCCTACCAAACCAAATTCAAATCTAGTTGTTATAGgtaactaaac ... atggttgcagGTATAGCAAACACAATGGATCTTCCAGAAAAGTTATTGCCTCGTATATCAA
EST: gi|31354612|gb|CD438969.1|CD438969
EST:     TAACATTCTTGACTGGCCTACCAAACCAAATTCAAATCTAGTTGTTATAG                         GTATAGCAAACACAATGGATCTTCCAGAAAAGTTATTGCCTCGTATATCAA
genomic: TAACATTCTTGACTGGCCTACCAAACCAAATTCAAATCTAGTTGTTATAGgtaactaaac ... atggttgcagGTATAGCAAACACAATGGATCTTCCAGAAAAGTTATTGCCTCGTATATCAA