1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTCCTTTGTGCTTCAACTGAAGATCATGCTGCTGTGGAGCCTTTGATTCCTCCAGAAGGAGCCAAGATTGGAGAACGCATTTCATTTGCTGGgtcagtatataatcaatttaaaggcccatttgcgcagttagcatttatattctgtctagctgtcctgatttagtgatttatactcatgaatatgtcagcc...
species | Zea mays |
transcript | GRMZM2G166345_T03 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTGATTCCTCCAGAAGGAGCCAAGATTGGAGAACGCATTTCATTTGCTGG GTTTGATGGGAAGCCTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGAEST: gi|24934254|gb|CA452472.1|CA452472
genomic: TTGATTCCTCCAGAAGGAGCCAAGATTGGAGAACGCATTTCATTTGCTGGgtcagtatat ... tgatgtgtagGTTTGATGGGAAGCCTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGA
EST: TTGATTCCTCCAGAAGGAGCCAAGATTGGAGAACGCATTTCATTTGCTGG GTTTGATGGGAAGCCTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGAEST: gi|32944796|gb|CF049615.1|CF049615
genomic: TTGATTCCTCCAGAAGGAGCCAAGATTGGAGAACGCATTTCATTTGCTGGgtcagtatat ... tgatgtgtagGTTTGATGGGAAGCCTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGA
EST: TTGATTCCTCCAGAAGGAGCCAAAATTGGAGAACGCATTTCATTTGCTGG GTTTGATGGGAAGCCTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGAEST: gi|56462002|gb|CK986300.1|CK986300
genomic: TTGATTCCTCCAGAAGGAGCCAAGATTGGAGAACGCATTTCATTTGCTGGgtcagtatat ... tgatgtgtagGTTTGATGGGAAGCCTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGA
EST: TTGATTCCTCCAGAAGGAGCCAAGATTGGAGAACGCATTTCATTTGCTGG GTTTGATGGGAAGCCTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGA
genomic: TTGATTCCTCCAGAAGGAGCCAAGATTGGAGAACGCATTTCATTTGCTGGgtcagtatat ... tgatgtgtagGTTTGATGGGAAGCCTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCTTTGTGCTTCAACTGAAGATCATGCTGCTGTGGAGCCTTTGATTCCTCCAGAAGGAGCCAAGATTGGAGAACGCATTTCATTTGCTGGgtcagtatataatcaatttaaaggcccatttgcgcagttagcatttatattctgtctagctgtcctgatttagtgatttatactcatgaatatgtcagcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA