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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCGTTGCACAGCCAGGGAGAGgtatgttctttttcgggtaacactgaaggtccgccagtatttgtgatgcaatgaaattcatgttgcctctagatgatagcattgatcagcttcaccttga...

Basic information

species Zea mays
transcript GRMZM2G165926_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165926_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os03g13970.1 (Oryza sativa), 5'ss of exon 9
CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCGTTGCACAGCCAGGGAGAGgtatgttctttttcgggtaacactgaaggtccgccagtatttgtgatgcaatgaaattcatgttgcctctagatgatagcattgatcagcttcaccttga----
|| ||||||||||| |||||||| || ||||| ||||||||||||||||| |||||  | ||||| |||||||| | || |     || |  |  || |     ||| |   | |  |   |||  ||    | |   ||    ||   | |    |   || |    |    
CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgcttttctc----tatccttttagattgttgagtttcaatcaaacttagaaggtctgagtacagttatgacattagactttctattgtccctcgtacctt

upper sequence: GRMZM2G165926_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA02G05250.2 (Glycine max), 5'ss of exon 9
CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCGTTGCACAGCCAGGGAGAGgtatgttctttttc--gggtaacactga--aggtccgccagtatttgtgatgcaatgaaattcatgttgcctctagatgatagcattgatcagcttcaccttga
|||||||| ||||| || ||||| |||||||| |||||||||||||| ||  |||| |  |||   |||||| ||| | |||   ||  || | | |   |||  | ||  | |  |      | ||  |  |||  | |  |   ||| |  | |  |    |  |  |   
CTTCCTGGGGTTGACCCAAATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgtaggttttcttttatggaaaataatcattgggtttgacaaaaatcttttattgaagatttcaatgggggca-tgtttgacaaaaatctttttttgaagat---

upper sequence: GRMZM2G165926_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA16G23590.1 (Glycine max), 5'ss of exon 9
CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCGTTGCACAGCCAGGGAGAGgtatgttctttttcgggtaacac-----tgaaggtccgccagtatttgtgatgcaatgaaattcatgttgcctctagatgatagcattgatcagcttcaccttga
|||||||| ||||| || |||||||||||||| |||||||||||||| || ||||| |  |||   |||||| ||| | |||   | || |      |  || |     || || | | |    ||   |     |     | || ||  |||| |     || ||  ||    
CTTCCTGGGGTTGACCCAAATGATCCATCTGTCAAAGATTTGCTGGCTTCCTTGCAAAATCAGTCTGAGgtaggttttcttttatggaaaataatcattgagtttgaaaagaatctcttagaatatttcacagggggcatatttaaatt-tagcttcacctagattagcc----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14244816|gb|BG842754.2|BG842754
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCGTTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACACGTCAGACAAAACAGAAGACGATAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCGTTGCACAGCCAGGGAGAGgtatgttctt ... ttttaaacagCAAGAGAAGAAGGAAGACACGTCAGACAAAACAGAAGACGATAAGAACTGA
EST: gi|33097806|gb|CF057766.1|CF057766
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCGTTGCCCAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACCCGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCGTTGCACAGCCAGGGAGAGgtatgttctt ... ttttaaacagCAAGAGAAGAAGGAAGACACGTCAGACAAAACAGAAGACGATAAGAACTGA
EST: gi|37383796|gb|CF628931.1|CF628931
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCGTTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACACGTCAGACAAAACAGAAGACGATAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCGTTGCACAGCCAGGGAGAGgtatgttctt ... ttttaaacagCAAGAGAAGAAGGAAGACACGTCAGACAAAACAGAAGACGATAAGAACTGA