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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAATAATTGAGTACATCCCATTGTTGGCGAGTCAATTAGGTGTTGGGTTTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatcattagggttatgtcaaaacagtatctctttggagctgtctccagcgtctttatcttatatccttgagtgcatattggactttgtaatgtattgactaaaattgtcagtttaactaactaaaatttggatttcag

Basic information

species Zea mays
transcript GRMZM2G164352_T04
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164352_T04 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 9
TGCAATAATTGAGTACATCCCATTGTTGGCGAGTCAATTAGGTGTTGGGTTTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatcat-tagggttatgtcaaaacag-tatctctttggagctgtctccagcgtctttatcttatatccttgagtgcatattggactttgtaatgtattgactaaaattgtcagtttaactaactaaaatttggatttcag
|||||| || || || || || || ||||| |||||||| || ||| | ||||||||||||||||| || || || |||||||| ||||| | || ||||||||| | | || | | | | || ||| ||| | | | | | | | || | || || | |||||
TGCAATTATAGAATATATACCCTTATTGGCAAGTCAATTGGGGGTTAGTTTTTTCGATGACAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAGgtttgtgctctacacttccttgctagtgtgggtgcattttgggaactgcat--attgcacatgacggtttttgttaac--caccttagttattgtag------------------------------------------------

upper sequence: GRMZM2G164352_T04 (Zea mays), 5'ss of exon 9
lower sequence: AT3G25800.1 (Arabidopsis thaliana), 5'ss of exon 8
TGCAATAATTGAGTACATCCCATTGTTGGCGAGTCAATTAGGTGTTGGGTTTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatcattagggttatgtcaaaacagtatctctttggagctgtctccagcgtctttatcttatatcc-ttgagtgcatattggactttgtaatgtattgactaaaattgtcagtttaactaactaaaatttggatttcag
||| ||||| ||||| ||||| |||||||| ||||| ||||||||||| || || || || ||||| || || || |||||||||||||| ||||||||| | | || || | | || | || || | | | | || | | ||||| |||| | | || ||| | | | || | | | | | ||
TGCTATAATCGAGTATATCCCTTTGTTGGCAAGTCAGTTAGGTGTTGGCTTCTTTGACGATAAGCTTGGTGCTCTTTGCATGCAATGGTTACAAGACAAGg--tatttcttt----ctctctcttacttttactgggaatgatcagattataccgcttcttatttatagaaattgatttttttttttttttttttttttttttttttttgcggatgctctcattag------------------

upper sequence: GRMZM2G164352_T04 (Zea mays), 5'ss of exon 9
lower sequence: AT1G13320.2 (Arabidopsis thaliana), 5'ss of exon 9
TGCAATAATTGAGTACATCCCATTGTTGGCGAGTCAATTAGGTGTTGGGTTTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatcattagggttatgtcaaaacagtatctctttggagctgtctccagcgtctttatcttatatccttgagtgcatattggactttgtaatgtattgactaaaattgtcagtttaactaactaaaatttggatttcag
|| ||||| ||||| || || |||||||| |||||||||||||| || || || ||||| ||||| || || || |||||||||||||| |||||||||| | | | | || || || | | | | | ||| ||| | |||| || | | | |
GGCTATAATCGAGTATATTCCCTTGTTGGCCAGTCAATTAGGTGTAGGCTTCTTTGATGAGAAGCTTGGTGCTCTTTGCATGCAATGGTTACAAGACAAGgtccctcattctctaccttcattgaatca---tccagataaataaatttgtcgtctctactgcttgaaattttgaaataattataaattgtcag-------------------------------------------------

upper sequence: GRMZM2G164352_T04 (Zea mays), 5'ss of exon 9
lower sequence: AT1G25490.1 (Arabidopsis thaliana), 5'ss of exon 9
TGCAATAATTGAGTACATCCCATTGTTGGCGAGTCAATTAGGTGTTGGGTTTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgt-----atcattagggtt-atgtcaaaacagtatctctttggagctgtctccagcgtctttatcttatatccttgagtgcatattggactttgtaatgtattgactaaaattgtcagtttaactaactaaaatttggatttcag
||||||||| ||||| | ||| ||||||| || || |||||| | || ||||||||||||||||| || || || |||||||||||| || |||||||||||| ||| || ||| | || || ||| ||| | | | | | | ||||| ||
TGCAATAATAGAGTATGTTCCACTGTTGGCCAGCCAGTTAGGTATAGGATTTTTCGATGACAAGCTCGGAGCCCTTTGCATGCAATGGCTGCAAGACAAGgtttaccttgaatctttgatgtttgcataaatttctcattcacttgttattgtagatattgacactgttct-cctccttcag-------------------------------------------------------------------

upper sequence: GRMZM2G164352_T04 (Zea mays), 5'ss of exon 9
lower sequence: PP1S214_34V6.1 (Physcomitrella patens), 5'ss of exon 8
TGCAATAATTGAGTACATCCCATTGTTGGCGAGTCAATTAGGTGTTGGGTTTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatcattagggttatgtcaaaacagtatctctttggagctgtctccagcgtctttatcttatatccttgagtgcatattggactttgtaatgtattgactaaaattgtcagtttaactaactaaaatttggattt-cag
||| ||||||||||||||||| || ||||| || ||||||||||| | |||||||| ||||| || || || || |||||||| ||| | | ||| ||||| ||| || || || | | || ||| | || | || | || | | | | || |||| | |||| || | | | | | | |||||||| ||
TGCCATAATTGAGTACATCCCTTTATTGGCCAGCCAATTAGGTGTGGACTTTTTCGACGACAAACTAGGCGCTCTTTGCATGCAGTGGCTTGGAGATCAGgttcatat-------attcccatcaagcaatgtttcgatggtg--gtttgtgtcgagatggtcgtcctcaatcagatctcttttcatatttgcttctttagaactagttcagtaatataatttcattcttttttggattaatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87156353|gb|DY401142.1|DY401142
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|37385657|gb|CF629982.1|CF629982
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|67016540|gb|CO445289.1|CO445289
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|32847987|gb|CD987668.1|CD987668
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|4886133|gb|AI677253.1|AI677253
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|32929892|gb|CF034704.1|CF034704
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|87157118|gb|DY401907.1|DY401907
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|31362531|gb|CD446888.1|CD446888
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|26558526|gb|CA830761.1|CA830761
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|113682754|gb|DW833176.1|DW833176
EST:     GGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: GGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|67017790|gb|CO446539.1|CO446539
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|32933390|gb|CF038202.1|CF038202
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|149075393|gb|EE163907.2|EE163907
EST:     GCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: GCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|22546073|gb|BU098394.1|BU098394
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|32847664|gb|CD987345.1|CD987345
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|60346737|gb|DN213710.1|DN213710
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|32939366|gb|CF044185.1|CF044185
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|211384211|gb|FL475814.1|FL475814
EST:     TCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGAT-STGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|13557744|gb|BG549100.1|BG549100
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|211206779|gb|FL154155.1|FL154155
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|60348170|gb|DN215143.1|DN215143
EST:     TTTCGATGACAAGCTGGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTCGATGACAAGCT-GGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|33103273|gb|CF063233.1|CF063233
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|24764008|gb|CA399177.1|CA399177
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|78025689|gb|DV494076.1|DV494076
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|60400129|gb|DN232936.1|DN232936
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|32907549|gb|CF012362.1|CF012362
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|60344803|gb|DN211776.1|DN211776
EST:     GACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: GACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|149000780|gb|EE038003.2|EE038003
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCCTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|40303778|gb|CK348165.1|CK348165
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|23357737|gb|BU645386.1|BU645386
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|32928724|gb|CF033536.1|CF033536
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|67022121|gb|CO450870.1|CO450870
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|60400542|gb|DN233349.1|DN233349
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|33095990|gb|CF055984.1|CF055984
EST:     GCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: GCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|26560084|gb|CA832319.1|CA832319
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|32846843|gb|CD986524.1|CD986524
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|67039515|gb|CO465770.1|CO465770
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|24767244|gb|CA402388.1|CA402388
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|20513030|gb|BQ280216.1|BQ280216
EST:     TGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|31355734|gb|CD440091.1|CD440091
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|33102660|gb|CF062620.1|CF062620
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
EST: gi|13315895|gb|BG410243.1|BG410243
EST:     TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAG                         GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA
genomic: TTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatca ... tggatttcagGTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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TGCAATAATTGAGTACATCCCATTGTTGGCGAGTCAATTAGGTGTTGGGTTTTTCGATGACAAGCTGGGGGCGCTCTGCATGCAATGGTTGGAAGACAAGgtttgtatcattagggttatgtcaaaacagtatctctttggagctgtctccagcgtctttatcttatatccttgagtgcatattggactttgtaatgtattgactaaaattgtcagtttaactaactaaaatttggatttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA