1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGAGGTTTTTGGAAATTTATCTGCATTCAGTCACATTGTAATATTTGAGTCAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAGgtaacacaccgttgtgccttggatatcacgtgttttctttttcacttagggctagtttgggaactccattttcccatggaatttctatttttccaaggga...
species | Zea mays |
transcript | GRMZM2G164175_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAG ATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCGEST: gi|71314140|gb|DR793687.1|DR793687
genomic: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAGgtaacacacc ... tggttggcagATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCG
EST: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAG ATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCGEST: gi|40336287|gb|CK370357.1|CK370357
genomic: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAGgtaacacacc ... tggttggcagATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCG
EST: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAG ATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCGEST: gi|71764471|gb|DR962408.1|DR962408
genomic: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAGgtaacacacc ... tggttggcagATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCG
EST: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAG ATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCGEST: gi|6654204|gb|AW267609.1|AW267609
genomic: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAGgtaacacacc ... tggttggcagATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCG
EST: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAG ATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCGEST: gi|88748600|gb|DY532741.1|DY532741
genomic: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAGgtaacacacc ... tggttggcagATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCG
EST: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAG ATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCGEST: gi|71321848|gb|DR797614.1|DR797614
genomic: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAGgtaacacacc ... tggttggcagATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCG
EST: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAG ATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCGEST: gi|76932561|gb|DV173073.1|DV173073
genomic: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAGgtaacacacc ... tggttggcagATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCG
EST: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAG ATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCGEST: gi|4826073|gb|AI667701.1|AI667701
genomic: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAGgtaacacacc ... tggttggcagATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCG
EST: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAG ATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCGEST: gi|211236953|gb|FK974486.1|FK974486
genomic: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAGgtaacacacc ... tggttggcagATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCG
EST: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAG ATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCGEST: gi|211236952|gb|FK974485.1|FK974485
genomic: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAGgtaacacacc ... tggttggcagATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCG
EST: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAG ATGAGGAGGTTTTTTCCACTCACATTTTCAAGGTTGACAGAGACCTTCAGTEST: gi|148948729|gb|EC898651.2|EC898651
genomic: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAGgtaacacacc ... tggttggcagATGAGGAGGTTTTT-CCACTCACATTT-CAAGGTTGACAGAGACCTTCAGT
EST: CAGAAGAAAGACATGTTCTCCAGTTGCTTTTGCACAATTCCTTTCTTGAG ATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCGEST: gi|37392942|gb|CF633725.1|CF633725
genomic: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAGgtaacacacc ... tggttggcagATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCG
EST: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAG ATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCGEST: gi|211131602|gb|FL458961.1|FL458961
genomic: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAGgtaacacacc ... tggttggcagATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCG
EST: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAG ATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCG
genomic: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAGgtaacacacc ... tggttggcagATGAGGAGGTTTTTCCACTCACATTTCAAGGTTGACAGAGACCTTCAGTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGGTTTTTGGAAATTTATCTGCATTCAGTCACATTGTAATATTTGAGTCAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAGgtaacacaccgttgtgccttggatatcacgtgttttctttttcacttagggctagtttgggaactccattttcccatggaatttctatttttccaaggga
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA