1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCTGAATCAAAGCACAGCAGCAGCAACAACAACTCTTGGGTTTGATGGGACGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAGgtaaactatatggtgcctgagtcttgcatgaggttgacaaattcttttgttcactaactctttgcctgctgctgacag
species | Zea mays |
transcript | GRMZM2G163888_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAG AATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCCEST: gi|211462558|gb|FL333208.1|FL333208
genomic: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAGgtaaactata ... ctgctgacagAATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCC
EST: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAG AATGAGAACCCTGCAATGTGGATGCATGGAGCTAGTTCACGAGGGATGCCCEST: gi|101394451|gb|EB819160.1|EB819160
genomic: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAGgtaaactata ... ctgctgacagAATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCC
EST: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAG AATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCCEST: gi|32941317|gb|CF046136.1|CF046136
genomic: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAGgtaaactata ... ctgctgacagAATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCC
EST: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAG AATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCCEST: gi|91048810|gb|EB159228.1|EB159228
genomic: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAGgtaaactata ... ctgctgacagAATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCC
EST: TTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAG AATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCCEST: gi|149061080|gb|EE157337.2|EE157337
genomic: TTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAGgtaaactata ... ctgctgacagAATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCC
EST: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAG AATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCCEST: gi|149013572|gb|EE043052.2|EE043052
genomic: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAGgtaaactata ... ctgctgacagAATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCC
EST: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAG AATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCCEST: gi|30306548|gb|CD001221.1|CD001221
genomic: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAGgtaaactata ... ctgctgacagAATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCC
EST: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAG AATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCCEST: gi|30705282|gb|CD058732.1|CD058732
genomic: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAGgtaaactata ... ctgctgacagAATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCC
EST: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAG AATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCCEST: gi|60396154|gb|DN229023.1|DN229023
genomic: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAGgtaaactata ... ctgctgacagAATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCC
EST: GTCCCCTTCACATTTCAAAGATGGAAATCAATTTATTTTCTCTTCAGCAG AATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCCEST: gi|30088189|gb|CB886394.1|CB886394
genomic: GT-CCCTTCACATTTCAAAGATGGAAATCAATTTA-TTTCTCTTCAGCAGgtaaactata ... ctgctgacagAATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCC
EST: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAG AATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCCEST: gi|95107690|gb|EB739919.1|EB739919
genomic: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAGgtaaactata ... ctgctgacagAATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCC
EST: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAG AATGAGAACCCTGCAATGTGGATGCEST: gi|60342207|gb|DN209180.1|DN209180
genomic: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAGgtaaactata ... ctgctgacagAATGAGAACCCTGCAATGTGGATGC
EST: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAG AATGAGAACCCTGCAATGTGGATGCATGGAGCTAGTTCACGAGGGATGCCCEST: gi|87157453|gb|DY402242.1|DY402242
genomic: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAGgtaaactata ... ctgctgacagAATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCC
EST: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAG AATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCCEST: gi|211310430|gb|FL459507.1|FL459507
genomic: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAGgtaaactata ... ctgctgacagAATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCC
EST: GAAATCAATTTATTTCTCTTCAGCAG AATGAGAACCCTGCAATGTGGATGCATGGAGCTAGTTCACGA-GGATGCCCEST: gi|211470005|gb|FL327953.1|FL327953
genomic: GAAATCAATTTATTTCTCTTCAGCAGgtaaactata ... ctgctgacagAATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCC
EST: TTTATTTCTCTTCAGCAG AATGAGAACCCTGCAATGTGGATGCATGGAGCTAGTTCACGAGGGATGCCCEST: gi|71444780|gb|DR825830.1|DR825830
genomic: TTTATTTCTCTTCAGCAGgtaaactata ... ctgctgacagAATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCC
EST: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAG AATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCCEST: gi|30705899|gb|CD058963.1|CD058963
genomic: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAGgtaaactata ... ctgctgacagAATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCC
EST: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAG AATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCCEST: gi|30087800|gb|CB886006.1|CB886006
genomic: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAGgtaaactata ... ctgctgacagAATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCC
EST: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAG AATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCC
genomic: CGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAGgtaaactata ... ctgctgacagAATGAGAACCCTGCAATGTGGATGCATGGTGCTAGTTCACGAGGGATGCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGAATCAAAGCACAGCAGCAGCAACAACAACTCTTGGGTTTGATGGGACGGTCCCTTCACATTTCAAAGATGGAAATCAATTTATTTCTCTTCAGCAGgtaaactatatggtgcctgagtcttgcatgaggttgacaaattcttttgttcactaactctttgcctgctgctgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA