1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATCAGCTTGCCCTGgtatgatctacgttgccgatttctcttcatgttgcgcaaacaattttggttttgatgctaccatcatatatgcactagacttaaagggttttttttttgcag
species | Zea mays |
transcript | GRMZM2G162672_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATCAGCTTGCCCTG GTGGGCTGGCCAGGCGTTATTTGGAACTCTTACACCAGATATCATTGTCTTEST: gi|211036106|gb|FL230098.1|FL230098
genomic: GGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATCAGCTTGCCCTGgtatgatcta ... ttttttgcagGTGGGCTGGCCAGGCGTTATTTGGAACTCTTACACCAGATATCATTGTCTT
EST: GGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATCAGCTTGCCCTG GTGGGCTGGCCAGGCGTTATTTGGAACTCTTACACCAGATATCATTGTCTTEST: gi|61119511|gb|DN560472.1|DN560472
genomic: GGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATCAGCTTGCCCTGgtatgatcta ... ttttttgcagGTGGGCTGGCCAGGCGTTATTTGGAACTCTTACACCAGATATCATTGTCTT
EST: GGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATCAGCTTGCCCTG GTGGGCTGGCCAGGCGTTATTTGGAACTCTTACACCAGATATCATTGTCTTEST: gi|211036107|gb|FL230099.1|FL230099
genomic: GGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATCAGCTTGCCCTGgtatgatcta ... ttttttgcagGTGGGCTGGCCAGGCGTTATTTGGAACTCTTACACCAGATATCATTGTCTT
EST: GGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATCAGCTTGCCCTG GTGGGCTGGCCAGGCGTTATTTGGAACTCTTACACCAGATATCATTGTCTTEST: gi|78120047|gb|DV538431.1|DV538431
genomic: GGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATCAGCTTGCCCTGgtatgatcta ... ttttttgcagGTGGGCTGGCCAGGCGTTATTTGGAACTCTTACACCAGATATCATTGTCTT
EST: GGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATCAGCTTGCCCTG GTGGGCTGGCCAGGCGTTATTTGGAACTCTTACACCAGATATCATTGTCTTEST: gi|71426127|gb|DR807177.1|DR807177
genomic: GGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATCAGCTTGCCCTGgtatgatcta ... ttttttgcagGTGGGCTGGCCAGGCGTTATTTGGAACTCTTACACCAGATATCATTGTCTT
EST: GGTGCGAGTTACATCAGCTTGCCCTG GTGGGCTGGCCAGGCGTTATTTGGAACTCTTACACCAGATATCATTGTCTTEST: gi|149080582|gb|EE169625.2|EE169625
genomic: GGTGCGAGTTACATCAGCTTGCCCTGgtatgatcta ... ttttttgcagGTGGGCTGGCCAGGCGTTATTTGGAACTCTTACACCAGATATCATTGTCTT
EST: GGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATCAGCTTGCCCTG GTGGGCTGGCCAGGCGTTATTTGGAACTCTTACACCAGATATCATTGTCTT
genomic: GGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATCAGCTTGCCCTGgtatgatcta ... ttttttgcagGTGGGCTGGCCAGGCGTTATTTGGAACTCTTACACCAGATATCATTGTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCAAGCAGAATGGATGGATTGGGAACTTCGCTCTGGGTGCGAGTTACATCAGCTTGCCCTGgtatgatctacgttgccgatttctcttcatgttgcgcaaacaattttggttttgatgctaccatcatatatgcactagacttaaagggttttttttttgcag
- - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - TCAGCT