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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGATCTCCAAGTCGCTACGAATAGCTTCTGTGAAGACTCTCTCCTAGGCGAGGGTTCGCTTGGTCGTGTTTACAAGGCTGGTTTTCCTAATGGGAAGgtaataggatatttgacgtaactgaacattttgagctgtgccttatcccctgtgatgcatggcag

Basic information

species Zea mays
transcript GRMZM2G162531_T03
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G162531_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os06g42800.1 (Oryza sativa), 5'ss of exon 11
TGCTGATCTCCAAGTCGCTACGAATAGCTTCTGTGAAGACTCTCTCCTAGGCGAGGGTTCGCTTGGTCGTGTTTACAAGGCTGGTTTTCCTAATGGGAAGgtaataggatatttgacgtaactgaacatt--ttgagctgtgccttatcccctgtgat--gcatggcag----------------------------------------------------------------------------
||||  ||||||||| ||||| || ||||||||  |||| || |||||||| |||||||| |||||||||||||||||||| |  || || ||||| ||||||| |    | |||  ||||   |   ||  |  |        |  | |  ||   |  |||||| |                                                                             
TGCTTCTCTCCAAGTTGCTACAAACAGCTTCTGCCAAGATTCGCTCCTAGGTGAGGGTTCACTTGGTCGTGTTTACAAGGCCGACTTCCCCAATGGAAAGgtaaaacatcacttgcagtaatctattgttggtcaatacagaaatattactttgaacttagcatggtattgccttatatatgttcaacaagtgtttatttgcatagctatgacgcagtggaactgaattctgtgcttgatcgcag

upper sequence: GRMZM2G162531_T03 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA15G11820.1 (Glycine max), 5'ss of exon 11
TGCTGATCTCCAAGTCGCTACGAATAGCTTCTGTGAAGACTCTCTCCTAGGCGAGGGTTCGCTTGGTCGTGTTTACAAGGCTGGTTTTCCTAATGGGAAGgtaa-----taggat---atttgacgtaactgaacattttgagctgt--gccttatcccctgtgatgcatggcag-------------------------
||||  |||||||   || || ||||||||  || |||| | | |  | || || ||||| ||||| || ||||||||||||| ||| || |||||||||||||     ||| ||   |||||   | |     | |  ||   | |  |  ||    | ||| |||  ||| ||                         
TGCTTCTCTCCAAAGTGCAACAAATAGCTTTAGTCAAGAATTTATTATTGGTGAAGGTTCTCTTGGCCGAGTTTACAAGGCTGATTTCCCAAATGGGAAGgtaaccttttagtattgcatttgttatcaaccttcctactgcatttttggaatttattcttgttatgtttggaagaaaaatacctattaaattacaagct