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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagttccttttatcatgcttcaaccatagtgcatgcatgactcttgcaacggttgagattatcttgttctgttgataaaatggtag

Basic information

species Zea mays
transcript GRMZM2G161418_T05
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G161418_T05 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA03G04500.1 (Glycine max), 5'ss of exon 9
GTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagttccttttatcatgcttcaaccatagtgcatgcatgactcttgca-acggttgagattatcttgttctgttgataaaatggtag---------
|||||||| ||||| ||||||||||| |||||||| |||||||| ||  | ||||| || ||||  || |||||||||| | ||   |||| |||  || |    |   | |   |  ||      |      |   |  || |||||        | |||  ||          
GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaatttgtcttta-catatttaactttttcagtacatagtacatacagatgtaacttcaacgattttgtttacccatcagaattataaatacatcaa

upper sequence: GRMZM2G161418_T05 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA16G25450.3 (Glycine max), 5'ss of exon 9
GTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagttccttttatcatgcttcaaccat--agtgcatgcatgactc-ttgcaacggttgagattatcttgttctgttgataaaatggtag--------
|||||||| ||||| ||||||||||| |||||||| ||||| || ||  | ||||| || ||||  || |||||||||| ||||   |||  |||  || |    |  ||| ||| ||    |  || ||||| ||  |  ||  |  |  |  | ||||||   |          
GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagttgtctttg-catatttaactttttcagtacatacagatgtaatttcaacgattttgtatag-tcatcataatcataaaagcattacatttaga