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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTCTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatataagtttccatcctccattcaatctttgagctatattactatttaagaagctaatttccatattttattgtattgtag

Basic information

species Zea mays
transcript GRMZM2G159369_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G159369_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os05g06430.1 (Oryza sativa), 5'ss of exon 10
GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTCTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggca-tataagtttccat-cctccattcaatctttgagctatattact-atttaagaagctaatttccatattttattgtattgtag
| | |||||||| |||||||   |||||||||||||||| || ||||||||||| ||||||||||||||  ||||||||||||| |||||| ||||||||||| |||  | ||||||| || |||| ||||| | |       |||||||| | |  |||| || ||||||||  || ||  |||   ||
GTACGGAAAGATCTATGTGAACTCTGCAAAGAAGATCATGGAGAAGGGCTCTGAATACACTAAGAAGGAATCTGAGAGGCTTCAACGCATGTTGGAGAAGgtgagcaacaaaagtttctattcctcaattcactttggacatcatattacttaatctagaatctgatttccatgcttcatcatatgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60400615|gb|DN233422.1|DN233422
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|60349176|gb|DN216149.1|DN216149
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|32945558|gb|CF050377.1|CF050377
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|33101695|gb|CF061655.1|CF061655
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|18177252|gb|BM378462.1|BM378462
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|50323733|gb|CO518859.1|CO518859
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|5901141|gb|AW042241.1|AW042241
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|6865233|gb|AW360583.1|AW360583
EST:     CTGGCTNCACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|148932685|gb|EC876639.2|EC876639
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|86466435|gb|DY232805.1|DY232805
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|4647206|gb|AI622281.1|AI622281
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|32857597|gb|CD997278.1|CD997278
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|6227253|gb|AW155852.1|AW155852
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|211059073|gb|FL239922.1|FL239922
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|5928651|gb|AW056048.1|AW056048
EST:     TGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: TGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|37380832|gb|CF627255.1|CF627255
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|60399092|gb|DN231906.1|DN231906
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|211474733|gb|FL432049.1|FL432049
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCMCCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|78084676|gb|DV513069.1|DV513069
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|32867151|gb|CF006833.1|CF006833
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|24767522|gb|CA402664.1|CA402664
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|21809934|gb|BQ668252.1|BQ668252
EST:     CTGACTACCCTAAGAAGGAGACTGAGAGGCTTCGCCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|4646531|gb|AI491677.2|AI491677
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|37379835|gb|CF626683.1|CF626683
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|4681139|gb|AI629809.1|AI629809
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|32940600|gb|CF045419.1|CF045419
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|78545093|gb|DV622591.1|DV622591
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|20513042|gb|BQ280228.1|BQ280228
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|31558598|gb|CD527810.1|CD527810
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|60350336|gb|DN217309.1|DN217309
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|33091270|gb|CF051264.1|CF051264
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|211059072|gb|FL239921.1|FL239921
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|60356885|gb|DN223858.1|DN223858
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|148961931|gb|EE012723.2|EE012723
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|6022466|gb|AW067499.1|AW067499
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|13177820|gb|BG349168.1|BG349168
EST:     CGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|37388199|gb|CF631306.1|CF631306
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|101386448|gb|EB815241.1|EB815241
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|5871206|gb|AW017677.1|AW017677
EST:     GGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: GGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|71326463|gb|DR799911.1|DR799911
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|211217629|gb|FL066544.1|FL066544
EST:     CTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|14244876|gb|BG842814.2|BG842814
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|24763724|gb|CA398895.1|CA398895
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCCCCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|6020864|gb|AW065792.1|AW065792
EST:     GGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: GGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|14244794|gb|BG842732.2|BG842732
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|211217628|gb|FL066543.1|FL066543
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|60343927|gb|DN210900.1|DN210900
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|32934912|gb|CF039724.1|CF039724
EST:     CTGACTACACTAAGAAGGGGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|32935845|gb|CF040657.1|CF040657
EST:     ATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: ATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|211217627|gb|FL066542.1|FL066542
EST:     ATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: ATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|9254367|gb|BE344835.1|BE344835
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|149096331|gb|EE182050.2|EE182050
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|67024988|gb|CO453737.1|CO453737
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|14244939|gb|BG842877.2|BG842877
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|21828690|gb|BQ703374.1|BQ703374
EST:     CTGACTACCCTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|6102035|gb|AW126505.1|AW126505
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|37397302|gb|CF635947.1|CF635947
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|60358667|gb|DN225640.1|DN225640
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|32862901|gb|CF002583.1|CF002583
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTCTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatataagtttccatcctccattcaatctttgagctatattactatttaagaagctaatttccatattttattgtattgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA