Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTGTGAAGGAGTTTCTCAATGCTGCTGATGACAAGCGGAAGGAAGTCCTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttcttccaccttcccctacactatgcttgcaagctactcgattgatttaacattcttattatgtaggcagtgccattgtcaaattacaagtactaactattttgcttctaaaccag

Basic information

species Zea mays
transcript GRMZM2G159369_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G159369_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os05g06430.1 (Oryza sativa), 5'ss of exon 9
CTCTTGTGAAGGAGTTTCTCAATGCTGCTGATGACAAGCGGAAGGAAGTCCTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttcttccaccttcccctacactatgcttgcaagctactcgattgatttaacattcttattatgtaggcagtgccattgtcaaattacaagtactaactattttgcttctaaaccag
|||||||||||||||| ||   ||| ||  |||| |||||||| |||| |||||| ||||| |||||||||||||| |||||||  ||  |||| ||||||||||   ||     |||  ||   || |  ||  |   |  |   | | |||  |||  | | | |||        ||||| |     || |                            
CTCTTGTGAAGGAGTTCCTTGGTGCAGCAAATGATAAGCGGAAAGAAGCCCTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCAAgtactaaatt-----ttcatct---ctgtttttaaattttgttatgtaggtttggcatcgtcactgtgtgaatttaaccatttt---gctaaag---------------------------

upper sequence: GRMZM2G159369_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os05g06430.2 (Oryza sativa), 5'ss of exon 9
CTCTTGTGAAGGAGTTTCTCAATGCTGCTGATGACAAGCGGAAGGAAGTCCTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttcttccaccttcccctacactatgcttgcaagctactcgattgatttaacattcttattatgtaggcagtgccattgtcaaattacaagtactaactattttgcttctaaaccag
|||||||||||||||| ||   ||| ||  |||| |||||||| |||| |||||| ||||| |||||||||||||| |||||||  ||  |||| ||||||||||   ||     |||  ||   || |  ||  |   |  |   | | |||  |||  | | | |||        ||||| |   |   ||                            
CTCTTGTGAAGGAGTTCCTTGGTGCAGCAAATGATAAGCGGAAAGAAGCCCTCTCCAAAATGGAAGAGGATGTTGCGAAGCTCACTGGCCCTGCTGCCAAgtactaaatt-----ttcatct---ctgtttttaaattttgttatgtaggtttggcatcgtcactgtgtgaatttaaccattttgctaaagcag---------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60400615|gb|DN233422.1|DN233422
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|60349176|gb|DN216149.1|DN216149
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|60355512|gb|DN222485.1|DN222485
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|32945558|gb|CF050377.1|CF050377
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|33101695|gb|CF061655.1|CF061655
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|18177252|gb|BM378462.1|BM378462
EST:     CTCTCTAAAATAGAAGAGGATGTTGTTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|241994843|gb|GR421187.1|GR421187
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|50323733|gb|CO518859.1|CO518859
EST:     CTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|5901141|gb|AW042241.1|AW042241
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|6865233|gb|AW360583.1|AW360583
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGNCAGCTGCAAAGAAGATCATAGGCAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|148932685|gb|EC876639.2|EC876639
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|86466435|gb|DY232805.1|DY232805
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|4647206|gb|AI622281.1|AI622281
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|60396463|gb|DN229332.1|DN229332
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|32857597|gb|CD997278.1|CD997278
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|6227253|gb|AW155852.1|AW155852
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|211059073|gb|FL239922.1|FL239922
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCRAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|60350336|gb|DN217309.1|DN217309
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|37380832|gb|CF627255.1|CF627255
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGTAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|60399092|gb|DN231906.1|DN231906
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|24934298|gb|CA452516.1|CA452516
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|211474733|gb|FL432049.1|FL432049
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|78084676|gb|DV513069.1|DV513069
EST:     GCTAAGCTCAGCGTTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: GCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|32867151|gb|CF006833.1|CF006833
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|24767522|gb|CA402664.1|CA402664
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|21809934|gb|BQ668252.1|BQ668252
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|5922104|gb|AW055498.1|AW055498
EST:     CTCTCTAAAATAGAAGAGGATGNTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGNGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|4646531|gb|AI491677.2|AI491677
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|67039449|gb|CO465704.1|CO465704
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|37379835|gb|CF626683.1|CF626683
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|32940600|gb|CF045419.1|CF045419
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|78545093|gb|DV622591.1|DV622591
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|31355506|gb|CD439863.1|CD439863
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|31558598|gb|CD527810.1|CD527810
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|33091270|gb|CF051264.1|CF051264
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|71326463|gb|DR799911.1|DR799911
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|211059072|gb|FL239921.1|FL239921
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|60356885|gb|DN223858.1|DN223858
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|148961931|gb|EE012723.2|EE012723
EST:     CTCTTTAAAATAGAAGAGGATGTTGCTAAGTTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|6022466|gb|AW067499.1|AW067499
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|37388199|gb|CF631306.1|CF631306
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|20513042|gb|BQ280228.1|BQ280228
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|101386448|gb|EB815241.1|EB815241
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|32916349|gb|CF021161.1|CF021161
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|211497907|gb|FK991939.1|FK991939
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|14244876|gb|BG842814.2|BG842814
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|24763724|gb|CA398895.1|CA398895
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|67024988|gb|CO453737.1|CO453737
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|32846337|gb|CD986018.1|CD986018
EST:     CTCTCTAAAATAGAAGAGGATGCTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|40336546|gb|CK370616.1|CK370616
EST:     CTCTCTAATATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGNCAA-GAAGATCATAGACAAGGGCT
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTG-CAAAGAAGATCATAGACAAGGGCT
EST: gi|32934912|gb|CF039724.1|CF039724
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|9254367|gb|BE344835.1|BE344835
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|149096331|gb|EE182050.2|EE182050
EST:     CTCTCTAAAATAGAAGAGGATGTTGTTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|14244939|gb|BG842877.2|BG842877
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|37393543|gb|CF634037.1|CF634037
EST:     CTCTCTAATATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|21828690|gb|BQ703374.1|BQ703374
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|6102035|gb|AW126505.1|AW126505
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|60343927|gb|DN210900.1|DN210900
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|37397302|gb|CF635947.1|CF635947
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|60358667|gb|DN225640.1|DN225640
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|32862901|gb|CF002583.1|CF002583
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
EST: gi|213192265|gb|FM195988.1|FM195988
EST:     CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAA                         GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC
genomic: CTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 884

CTCTTGTGAAGGAGTTTCTCAATGCTGCTGATGACAAGCGGAAGGAAGTCCTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTCTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 738

CTCTTGTGAAGGAGTTTCTCAATGCTGCTGATGACAAGCGGAAGGAAGTCCTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTCTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 651

CTCTTGTGAAGGAGTTTCTCAATGCTGCTGATGACAAGCGGAAGGAAGTCCTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTCTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1419

CTCTTGTGAAGGAGTTTCTCAATGCTGCTGATGACAAGCGGAAGGAAGTCCTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttctt ... tctaaaccagGCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTCTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTTGTGAAGGAGTTTCTCAATGCTGCTGATGACAAGCGGAAGGAAGTCCTCTCTAAAATAGAAGAGGATGTTGCTAAGCTCAGCGGTTCTGCAGCCAAgtactttcttccaccttcccctacactatgcttgcaagctactcgattgatttaacattcttattatgtaggcagtgccattgtcaaattacaagtactaactattttgcttctaaaccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG