1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTTTGGACGAAGAACTTGAAGGACCAGCATCCAGTATTGCTTCCTCTCTGAGGAAGAAAGGCCGATCTGTTGAACTTGTAGAAGACAAACGTCTCAAATGgtatacctatcatttttccctttctttattgacttgtctgaaatatctgttttgctactactattatttcctttcttcattgccgtgtctgaaatacccgttttgccactactag
species | Zea mays |
transcript | GRMZM2G158228_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGGAAGAAAGGCCGATCTGTTGAACTTGTAGAAGACAAACGTCTCAAATG GGTATTTAAGCATGCGGAGAGGATCAATGCGAGCCGGCTGATATTGGTTGGEST: gi|40335023|gb|CK369093.1|CK369093
genomic: AGGAAGAAAGGCCGATCTGTTGAACTTGTAGAAGACAAACGTCTCAAATGgtatacctat ... ccactactagGGTATTTAAGCATGCGGAGAGGATCAATGCGAGCCGGCTGATATTGGTTGG
EST: AGGAAGAAAGGCCGATCTGTTGACCTTGTAGAAGACAAACGTCTCAAATG GGTATTTAAGCATGCGGAGAGGATCAATGCGAGCCGGCTGATATTGGTTGGEST: gi|110525484|gb|EE029668.1|EE029668
genomic: AGGAAGAAAGGCCGATCTGTTGAACTTGTAGAAGACAAACGTCTCAAATGgtatacctat ... ccactactagGGTATTTAAGCATGCGGAGAGGATCAATGCGAGCCGGCTGATATTGGTTGG
EST: AGGAAGAAAGGCCGATCTGTTGAACTTGTAGAAGACAAACGTCTCAAATG GGTATTTAAGCATGCGGAGAGGATCAATGCGAGCCGGCTGATATTGGTTGGEST: gi|32165040|gb|CD670358.1|CD670358
genomic: AGGAAGAAAGGCCGATCTGTTGAACTTGTAGAAGACAAACGTCTCAAATGgtatacctat ... ccactactagGGTATTTAAGCATGCGGAGAGGATCAATGCGAGCCGGCTGATATTGGTTGG
EST: AGGAAGAAAGGCCGATCTGTTGAACTTGTAGAAGACAAACGTCTCAAATG GGTATTTAAGCATGCGGAGAGGATCAATGCGAGCCGGCTGATATTGGTTGGEST: gi|37380182|gb|CF626875.1|CF626875
genomic: AGGAAGAAAGGCCGATCTGTTGAACTTGTAGAAGACAAACGTCTCAAATGgtatacctat ... ccactactagGGTATTTAAGCATGCGGAGAGGATCAATGCGAGCCGGCTGATATTGGTTGG
EST: AGGAAGAAAGGCCGATCTGTTGACCTTGTAGAAGACAAACGTCTCAAATG GGTATTTAAGCATGCGGAGAGGATCAATGCGAGCCGGCTGATATTGGTTGGEST: gi|76910389|gb|DV163841.1|DV163841
genomic: AGGAAGAAAGGCCGATCTGTTGAACTTGTAGAAGACAAACGTCTCAAATGgtatacctat ... ccactactagGGTATTTAAGCATGCGGAGAGGATCAATGCGAGCCGGCTGATATTGGTTGG
EST: AGGAAGAAAGGCCGATCTGTTGAACTTGTAGAAGACAAACGTCTCAAATG GGTATTTAAGCATGCGGAGAGGATCAATGCGAGCCGGCTGATATTGGTTGGEST: gi|33091456|gb|CF051450.1|CF051450
genomic: AGGAAGAAAGGCCGATCTGTTGAACTTGTAGAAGACAAACGTCTCAAATGgtatacctat ... ccactactagGGTATTTAAGCATGCGGAGAGGATCAATGCGAGCCGGCTGATATTGGTTGG
EST: AGGAAGAAAGGCCGATCTGTTGACCTTGTAGAAGACAAACGTCTCAAATG GGTATTTAAGCATGCGGAGAGGATCAATGCGAGCCGGCTGATATTGGTTGG
genomic: AGGAAGAAAGGCCGATCTGTTGAACTTGTAGAAGACAAACGTCTCAAATGgtatacctat ... ccactactagGGTATTTAAGCATGCGGAGAGGATCAATGCGAGCCGGCTGATATTGGTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGGACGAAGAACTTGAAGGACCAGCATCCAGTATTGCTTCCTCTCTGAGGAAGAAAGGCCGATCTGTTGAACTTGTAGAAGACAAACGTCTCAAATGgtatacctatcatttttccctttctttattgacttgtctgaaatatctgttttgctactactattatttcctttcttcattgccgtgtctgaaatacccgttttgccactactag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA