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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCAgtttggtttcgcattcttcttaccttgtattttttatttattctacacctaacgttatcccatgttgttcttgaaatggttgttgatctactgtcggcat...

Basic information

species Zea mays
transcript GRMZM2G158097_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158097_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os04g36062.1 (Oryza sativa), 5'ss of exon 9
AGCAGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCAgtttggt-----ttcgcattcttcttaccttgtattttttatttattctacacctaacgttatcccatgttgttcttgaaatggttgttgatctactgtcggcat
|||   || ||||||||||| ||||| |||||||| ||||||||||||||||||||  ||     | |   |  || |||   |||| |  ||   |||     |  |    |||| |||| |  |    |    |  | ||  ||||   | | |  
AGCGAGCATTGGGACACCTTTTATAAGTTCTACCGCAACACAACTGATAATCAgttcagtgcatttccttgtaatttttaaaatgtactaattccctatgtgcaaattggaattataccatataatgtgggcgtcg--tattagtctaaaat-gac--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78124181|gb|DV542565.1|DV542565
EST:     ACCGTAACACAACTGATAATCA                         TTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAA
genomic: ACCGTAACACAACTGATAATCAgtttggtttc ... ttcgctgcagTTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAA
EST: gi|71766886|gb|DR964823.1|DR964823
EST:     CTTCTATAAATTCTACCGTAACACAACTGATAATCA                         TTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAA
genomic: CTTCTATAAATTCTACCGTAACACAACTGATAATCAgtttggtttc ... ttcgctgcagTTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAA
EST: gi|32841147|gb|CD980828.1|CD980828
EST:     AGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCA                         TTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAA
genomic: AGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCAgtttggtttc ... ttcgctgcagTTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAA
EST: gi|32840869|gb|CD980550.1|CD980550
EST:     AGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCA                         TTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAA
genomic: AGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCAgtttggtttc ... ttcgctgcagTTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAA
EST: gi|13389377|gb|BG462692.1|BG462692
EST:     AGATTTTTTGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCA                         TTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAA
genomic: AGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCAgtttggtttc ... ttcgctgcagTTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAA
EST: gi|32841581|gb|CD981262.1|CD981262
EST:     AGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCA                         TTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAA
genomic: AGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCAgtttggtttc ... ttcgctgcagTTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAA
EST: gi|32841639|gb|CD981320.1|CD981320
EST:     AGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCA                         TTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAA
genomic: AGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCAgtttggtttc ... ttcgctgcagTTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAA