1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTTTCCGCATAACAAGAGAAGCATATCCATATGAAGACACTGCTCAGCTTCTTTCCAGTGTGATATCTCATTATGGAGCCAGTCGAGTAATGTGGGGAAGgtaaattcacagacccactgatatgatcatacactttaacagtgcctatttgtggaaaataagcattgaatcacaagagaaaccccagcagcatgcagca...
species | Zea mays |
transcript | GRMZM2G155962_T03 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTTTCCAGTGTGATATCTCATTATGGAGCCAGTCGAGTAATGTGGGGGAG TGACTTCCCCTEST: gi|76909087|gb|DV163216.1|DV163216
genomic: CTTTCCAGTGTGATATCTCATTATGGAGCCAGTCGAGTAATGTGGGGAAGgtaaattcac ... atgtttgcagTGACTTCCCCT
EST: CTTTCCAGTGTGATATCTCATTATGGAGCCAGTCGAGTAATGTGGGGAAG TGACTTCCCCTATGTTGTTCCTGAATGTGGTTACAAAGGAGGAAGGGAGGCEST: gi|88748896|gb|DY533037.1|DY533037
genomic: CTTTCCAGTGTGATATCTCATTATGGAGCCAGTCGAGTAATGTGGGGAAGgtaaattcac ... atgtttgcagTGACTTCCCCTATGTTGTTCCTGAATGTGGTTACAAAGGAGGAAGGGAGGC
EST: CTTTCCAGTGTGATATCTCATTATGGAGCCAGTCGAGTAATGTGGGGAAG TGACTTCCCCTATGTTGTTCCTGAATGTGGTTACAAAGGAGGAAGGGAGGCEST: gi|78090807|gb|DV519181.1|DV519181
genomic: CTTTCCAGTGTGATATCTCATTATGGAGCCAGTCGAGTAATGTGGGGAAGgtaaattcac ... atgtttgcagTGACTTCCCCTATGTTGTTCCTGAATGTGGTTACAAAGGAGGAAGGGAGGC
EST: CTTTCCAGTGTGATATCTCATTATGGAGCCAGTCGAGTAATGTGGGGAAG TGACTTCCCCTATGTTGTTCCTGAATGTGGTTACAAAAGAGGAAGGAAGGC
genomic: CTTTCCAGTGTGATATCTCATTATGGAGCCAGTCGAGTAATGTGGGGAAGgtaaattcac ... atgtttgcagTGACTTCCCCTATGTTGTTCCTGAATGTGGTTACAAAGGAGGAAGGGAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTCCGCATAACAAGAGAAGCATATCCATATGAAGACACTGCTCAGCTTCTTTCCAGTGTGATATCTCATTATGGAGCCAGTCGAGTAATGTGGGGAAGgtaaattcacagacccactgatatgatcatacactttaacagtgcctatttgtggaaaataagcattgaatcacaagagaaaccccagcagcatgcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccagc