Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttttctcctgcatcccggcatcactgcactgcgttttgcttcaatccagccactgatcgtctctctcgaaacctgaacaacag

Basic information

species Zea mays
transcript GRMZM2G155242_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155242_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os03g09250.3 (Oryza sativa), 5'ss of exon 8
-------------------------------------GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttttct--cctgcatcccggcatcactgcactgcgttttgcttcaatccagccactgat---cgtctctctcgaaa-------cctgaacaacag
                                     || || ||||| |||||||| || ||||| |||||||||||||||||||||||||||||||| || ||    | |   | |   | | | |       |  |  ||| |      ||  | | ||||||   | | | || |||||       |      |||||
TTGACTATGTTGTTGTTTCACTTGTTATCCTGTGCAGGAGAAGTTCCATTCCTTCCATCCAGTGGCTACCATCCTGAGCTACCTCACCAAGGCACCCCTTgtgagtgcatacatgcatctgtactgcccattaaccgttatgttctttcatgatataccaactgatttacttatgtcacgaaaaattcgtctcctggaacag

upper sequence: GRMZM2G155242_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 9
GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaag--ccttttctcctgcatcccggcatcactgcactgcgttttgcttcaatccagccactgat---cgtctctctcgaaa-------cctgaacaacag
|| || ||||| |||||||| || ||||| |||||||||||||||||||||||||||||||| || ||  | |     | |   | | | |       |  |  ||| |      ||  | | ||||||   | | | || |||||       |      |||||
GAGAAGTTCCATTCCTTCCATCCAGTGGCTACCATCCTGAGCTACCTCACCAAGGCACCCCTTGTGAGTGCATACATGCATCTgtactgcccattaaccgttatgttctttcatgatataccaactgatttacttatgtcacgaaaaattcgtctcctggaacag

upper sequence: GRMZM2G155242_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA05G31450.4 (Glycine max), 5'ss of exon 6
GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttttctcctgcatcccggcatcactgcactgcgtt--ttgcttcaatccagccactgatcgtctctctcgaaacctgaacaacag-------
|  ||||||||||| |||||||| || || |||||||| || ||||| |||||||| || |||||||| ||  |       || |    |    | || ||  ||  ||   ||| | |  ||  | ||    | ||| ||||    |  |  |        
GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACCAAGGCCCCTCTGgtaagtctaatactaccgattc--ataattgttcaatgaattaattctctcatttccccctttaattaaatttct-gaaatacaattattaaattacag

upper sequence: GRMZM2G155242_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 9
GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttttctcctgcatcccggcatc---actgcactgcgttt----tgcttcaatccagccactgatcgtctctctcga---aacctgaacaacag
||||| || || ||||||||||| || ||||||||||| || |||||||||||||| || |||||||| || |   | |||||  |         |      || |||     |  |  | ||   ||  | |||||   | | ||    |   |||| ||| 
GACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTGgtaagtctctctacatgcatttcaaagctttaaacttggtgggttccccatattctattctcccctttaatcgttgatttggacttgataagaaccacac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31352226|gb|CD436583.1|CD436583
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|6563690|gb|AW231417.1|AW231417
EST:     GTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: GTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|31362702|gb|CD447059.1|CD447059
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|24768785|gb|CA403914.1|CA403914
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAAAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|5069926|gb|AI737891.1|AI737891
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|5108056|gb|AI739769.1|AI739769
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|5108085|gb|AI739798.1|AI739798
EST:     CCTTCCAACCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|24768757|gb|CA403886.1|CA403886
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|5055740|gb|AI734627.1|AI734627
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|5058986|gb|AI737462.1|AI737462
EST:     CCTTCCACCCGGTGGCCCCCATCCTGAGCTGCCTCACCAAGGCCCCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCANAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|24765626|gb|CA400785.1|CA400785
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|24763844|gb|CA399015.1|CA399015
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|5080959|gb|AI738221.1|AI738221
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|5058910|gb|AI737386.1|AI737386
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|5055451|gb|AI734338.1|AI734338
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|211029044|gb|FL245290.1|FL245290
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|24764159|gb|CA399326.1|CA399326
EST:     GGTGGCCCCCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACCCCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: GGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|24767240|gb|CA402384.1|CA402384
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|5030583|gb|AI714777.1|AI714777
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|78021234|gb|DV489621.1|DV489621
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|5030749|gb|AI714943.1|AI714943
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|211414409|gb|FL441882.1|FL441882
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|6056859|gb|AW091264.1|AW091264
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|4938776|gb|AI691185.1|AI691185
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|71769562|gb|DR967499.1|DR967499
EST:     CTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|31361662|gb|CD446019.1|CD446019
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|24766339|gb|CA401493.1|CA401493
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|6021817|gb|AW066745.1|AW066745
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|148934897|gb|EC878943.2|EC878943
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|37380822|gb|CF627249.1|CF627249
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|211029039|gb|FL245285.1|FL245285
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|5108074|gb|AI739787.1|AI739787
EST:     GCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: GCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|4804284|gb|AI666150.1|AI666150
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|4314770|gb|AI444773.2|AI444773
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|20208400|gb|BQ134489.1|BQ134489
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|194716969|gb|FK934128.1|FK934128
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|67014060|gb|CO442809.1|CO442809
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|211032314|gb|FK948195.1|FK948195
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCAAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|14203207|gb|BG836884.1|BG836884
EST:     CCTTCCACCCGGTGGCCACCATCCTGYGCTKCCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGRTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|24763482|gb|CA398657.1|CA398657
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|24766267|gb|CA401422.1|CA401422
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|21759904|gb|BQ635445.1|BQ635445
EST:     CCTTCCACCCGGTGGCCCCCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|19822437|gb|BQ048461.1|BQ048461
EST:     CCTTCCACCCGG-GGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|78024917|gb|DV493304.1|DV493304
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|78022473|gb|DV490860.1|DV490860
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|24767004|gb|CA402149.1|CA402149
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|4730538|gb|AI649704.1|AI649704
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|20508170|gb|BQ279921.1|BQ279921
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|78023741|gb|DV492128.1|DV492128
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|5468566|gb|AI834357.1|AI834357
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|6022206|gb|AW067134.1|AW067134
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|31352116|gb|CD436473.1|CD436473
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|19769579|gb|BQ034300.1|BQ034300
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|89106005|gb|DY576222.1|DY576222
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCAAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|5468846|gb|AI834637.1|AI834637
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|5456315|gb|AI834005.1|AI834005
EST:     CCTTCCACCCGGTGGCCCCCATCCTGAGCTACCTCACCAAGGCCCCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|78545065|gb|DV622563.1|DV622563
EST:     CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
EST: gi|71769469|gb|DR967406.1|DR967406
EST:     CTGAGCTACCTCACCAAGGCACCCCTG                         GTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG
genomic: CTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 388

GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATGCTGGAGAACATCATGAGGGCCTGCGTTGGGCTGGCCCCAGAGAACAACA


Block sizes: 42 (upstream exon), 47 (downstream exon)
Score: 16

GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATGCTGGAGAACATCATGAGGGCCTGCGTTGGGCTGGCCCCAGAGAACAACA


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 15

GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATGCTGGAGAACATCATGAGGGCCTGCGTTGGGCTGGCCCCAGAGAACAACA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 174

GACAAATTCCACTCCTTCCACCCGGTGGCCACCATCCTGAGCTACCTCACCAAGGCACCCCTGgtaagccttt ... tgaacaacagGTTCCCCCTGGCACACCGGTGGTGAACGCTCTGGCCAAGCAGAGGGCGATGCTGGAGAACATCATGAGGGCCTGCGTTGGGCTGGCCCCAGAGAACAACA