1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCTGGAACGTCCTATGATCAGGCATCCCAGTTTAATAATGTTAATTCAGGGTGGAATGATCAAGCTGCCAACCTTCCAGCAGAGCAAGCACTGAATTACGgtatggcaagaattgtaatctctgatctgctgttatatctttctggaatactacttaattattactttattagtgtgtgcacttttctgtatcacttctgtccttcaaccagaactctctgtattcatatgaatctttctttttctatccgaagaagaagaagaaaaaaaaaagtgacgctagtatccatactctgtag
species | Zea mays |
transcript | GRMZM2G153138_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GTGGAATGATCAAGCTGCCAACCTTCCAGCAGAGCAAGCACTGAATTACG ATGATCAAAGTGGAAACCTTCCGCCACCTCCTTGGGAGGCTCTGCCAGCGGEST: gi|67026064|gb|CO454813.1|CO454813
genomic: GTGGAATGATCAAGCTGCCAACCTTCCAGCAGAGCAAGCACTGAATTACGgtatggcaag ... tactctgtagATGATCAAAGTGGAAACCTTCCGCCACCTCCTTGGGAGGCTCAGCCAGCGG
EST: GTGGAATGATCAAGCTGCCAACCTTCCAGCAGAGCAAGCACTGAATTACG ATGATCAAAGTGGAAACCTTCCGCCACCTCCTTGGGAGGCTCAGCCAGCGGEST: gi|32843027|gb|CD982708.1|CD982708
genomic: GTGGAATGATCAAGCTGCCAACCTTCCAGCAGAGCAAGCACTGAATTACGgtatggcaag ... tactctgtagATGATCAAAGTGGAAACCTTCCGCCACCTCCTTGGGAGGCTCAGCCAGCGG
EST: GTGGAATGATCAAGCTGCCAACCTTCCAGCAGAGCAAGCACTGAATTACG ATGATCAAAGTGGAAACCTTCCGCCACCTCCTTGGGAGGCTCAGCCAGCGGEST: gi|32841934|gb|CD981615.1|CD981615
genomic: GTGGAATGATCAAGCTGCCAACCTTCCAGCAGAGCAAGCACTGAATTACGgtatggcaag ... tactctgtagATGATCAAAGTGGAAACCTTCCGCCACCTCCTTGGGAGGCTCAGCCAGCGG
EST: GTGGAATGACCAACCAGCCAACCTTCCAGCAGAGCAAGCACTGAATTACG ATGATCAAAGTGGAAACCTTCCGCCACCTCCTTGGGAGGCTCAGCCAGCGGEST: gi|32843647|gb|CD983328.1|CD983328
genomic: GTGGAATGATCAAGCTGCCAACCTTCCAGCAGAGCAAGCACTGAATTACGgtatggcaag ... tactctgtagATGATCAAAGTGGAAACCTTCCGCCACCTCCTTGGGAGGCTCAGCCAGCGG
EST: GTGGAATGATCAAGCTGCCAACCTTCCAGCAGAGCAAGCACTGAATTACG ATGATCAAAGTGGAAACCTTCCGCCACCTCCTTGGGAGGCTCAGCCAGCGGEST: gi|32842914|gb|CD982595.1|CD982595
genomic: GTGGAATGATCAAGCTGCCAACCTTCCAGCAGAGCAAGCACTGAATTACGgtatggcaag ... tactctgtagATGATCAAAGTGGAAACCTTCCGCCACCTCCTTGGGAGGCTCAGCCAGCGG
EST: GTGGAATGATCAAGCTGCCAACCTTCCAGCAGAGCAAGCACTGAATTACG ATGATCAAAGTGGAAACCTTCCGCCACCTCCTTGGGAGGCTCAGCCAGCGG
genomic: GTGGAATGATCAAGCTGCCAACCTTCCAGCAGAGCAAGCACTGAATTACGgtatggcaag ... tactctgtagATGATCAAAGTGGAAACCTTCCGCCACCTCCTTGGGAGGCTCAGCCAGCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGGAACGTCCTATGATCAGGCATCCCAGTTTAATAATGTTAATTCAGGGTGGAATGATCAAGCTGCCAACCTTCCAGCAGAGCAAGCACTGAATTACGgtatggcaagaattgtaatctctgatctgctgttatatctttctggaatactacttaattattactttattagtgtgtgcacttttctgtatcacttctgtccttcaaccagaactctctgtattcatatgaatctttctttttctatccgaagaagaagaagaaaaaaaaaagtgacgctagtatccatactctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG