1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGTCCGGCCCATCTGTATGCTACTTCCATGTCGCCACCAGCAGTCCAACAAGTTATTTCTGCTATTAAAGTTATCCTTGGGGAGGATGGCTCCAACAGAGgtactaaaccagcttctttaacactttttgcccttttcatttgcagctgtgctaatgttcgattaaataattcttttttccttgtgatgtactgaag
species | Zea mays |
transcript | GRMZM2G152888_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGTTATTTCTGCTATTAAAGTTATCCTTGGGGAGGATGGCTCCAACAGAG GTGCCCAAAAACTTGCTCGCATCCGCGAGAATAGTAATTTCTTTAGGTCAGEST: gi|32834771|gb|CD974449.1|CD974449
genomic: AGTTATTTCTGCTATTAAAGTTATCCTTGGGGAGGATGGCTCCAACAGAGgtactaaacc ... tgtactgaagGTGCCCAAAAACTTGCTCGCATCCGCGAGAATAGTAATTTCTTTAGGTCAG
EST: AGTTATTTCTGCTATTAAAGTTATCCTTGGGGAGGATGGCTCCAACAGAG GTGCCCAAAAACTTGCTCGCATCCGCGAGAATAGTAATTTCTTCAGGTCAGEST: gi|71306654|gb|DR789487.1|DR789487
genomic: AGTTATTTCTGCTATTAAAGTTATCCTTGGGGAGGATGGCTCCAACAGAGgtactaaacc ... tgtactgaagGTGCCCAAAAACTTGCTCGCATCCGCGAGAATAGTAATTTCTTTAGGTCAG
EST: AGTTATTTCTGCTATTAAAGTTATCCTTGGGGAGGATGGCTCCAACAGAG GTGCCCAAAAACTTGCTCGCATCCGCGAGAATAGTAATTTCTTTAGGTCAGEST: gi|78083289|gb|DV511682.1|DV511682
genomic: AGTTATTTCTGCTATTAAAGTTATCCTTGGGGAGGATGGCTCCAACAGAGgtactaaacc ... tgtactgaagGTGCCCAAAAACTTGCTCGCATCCGCGAGAATAGTAATTTCTTTAGGTCAG
EST: GTTATTTTTGCTATTTAAAGTTATCCTTGGGGAGGATGGCTCCAACAGAG GTGCCCAAAAACTTGCTCGCATCCGCGAGAATAGTAATTTCTTTAGGTCAGEST: gi|78078704|gb|DV507116.1|DV507116
genomic: GTTATTTCTGCTA-TTAAAGTTATCCTTGGGGAGGATGGCTCCAACAGAGgtactaaacc ... tgtactgaagGTGCCCAAAAACTTGCTCGCATCCGCGAGAATAGTAATTTCTTTAGGTCAG
EST: AGTTATTTCTGCTATTAAAGTTATCCTTGGGGAGGATGGCTCCAACAGAG GTGCCCAAAAACTTGCTCGCATCCGCGAGAATAGTAATTTCTTTAGGTCAGEST: gi|32835583|gb|CD975261.1|CD975261
genomic: AGTTATTTCTGCTATTAAAGTTATCCTTGGGGAGGATGGCTCCAACAGAGgtactaaacc ... tgtactgaagGTGCCCAAAAACTTGCTCGCATCCGCGAGAATAGTAATTTCTTTAGGTCAG
EST: AGTTATTTCTGCTATTAAAGTTATCCTTGGGGAGGATGGCTCCAACAGAG GTGCCCAAAAACTTGCTCGCATCCGCGAGAATAGTAATTTCTTCAGGTCAGEST: gi|76011503|gb|DT938673.1|DT938673
genomic: AGTTATTTCTGCTATTAAAGTTATCCTTGGGGAGGATGGCTCCAACAGAGgtactaaacc ... tgtactgaagGTGCCCAAAAACTTGCTCGCATCCGCGAGAATAGTAATTTCTTTAGGTCAG
EST: AGTTATTTCTGCTATTAAAGTTATCCTTGGGGAGGATGGCTCCAACAGAG GTGCCCAAAAACTTGCTCGCATCCGCGAGAATAGTAATTTCTTTAGGTCAGEST: gi|86471728|gb|DY238098.1|DY238098
genomic: AGTTATTTCTGCTATTAAAGTTATCCTTGGGGAGGATGGCTCCAACAGAGgtactaaacc ... tgtactgaagGTGCCCAAAAACTTGCTCGCATCCGCGAGAATAGTAATTTCTTTAGGTCAG
EST: AGTTATTTCTGCTATTAAAGTTATTCTTGGGGAGGATGGCTCCAACAGAG GTGCCCAAAAACTTGCTCGCATCCGCGAGAATAGTAATTTCTTTAGGTCAG
genomic: AGTTATTTCTGCTATTAAAGTTATCCTTGGGGAGGATGGCTCCAACAGAGgtactaaacc ... tgtactgaagGTGCCCAAAAACTTGCTCGCATCCGCGAGAATAGTAATTTCTTTAGGTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCCGGCCCATCTGTATGCTACTTCCATGTCGCCACCAGCAGTCCAACAAGTTATTTCTGCTATTAAAGTTATCCTTGGGGAGGATGGCTCCAACAGAGgtactaaaccagcttctttaacactttttgcccttttcatttgcagctgtgctaatgttcgattaaataattcttttttccttgtgatgtactgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG