1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCCCTTGAAAGCTGTTAAGGTCATGCACACTGTTGCCCTGAGAACCGAGGCAACTATTCCTGGTGGGGAAACACCTGCAGACCTTGGTCAGGCTTTCAAGgtttgccacattcacctcttaagtattcgagaaaaataacattcacctcttcagtttttttccatcatgctgatcttccttttccattttccaaccacatatctttctgtag
species | Zea mays |
transcript | GRMZM2G152686_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAACTATTCCTGGTGGGGAAACACCTGCAGACCTTGGTCAGGCTTTCAAG AACCACATGAGCGAAATGTTCGCATACCATGCGACAATGATGTCAAATACCEST: gi|60346042|gb|DN213015.1|DN213015
genomic: CAACTATTCCTGGTGGGGAAACACCTGCAGACCTTGGTCAGGCTTTCAAGgtttgccaca ... ctttctgtagAACCACATGAGCGAAATGTTCGCATACCATGCAACAATGATGTCAAATACC
EST: AAACACCTGCAGACCTTGGTCAGGCTTTCAAG AACCACATGAGCGAAATGTTCGCATACCATGCAACAATGATGTCAAATACCEST: gi|5499208|gb|AI855075.1|AI855075
genomic: AAACACCTGCAGACCTTGGTCAGGCTTTCAAGgtttgccaca ... ctttctgtagAACCACATGAGCGAAATGTTCGCATACCATGCAACAATGATGTCAAATACC
EST: TTCCTGGTGGGGAAACACCTGCAGACCTTGGTCAGGCTTTCAAG AACCACATGAGCGAAATGTTCGCATACCATGCGACAATGATGTCAAATACCEST: gi|213173762|gb|FM184221.1|FM184221
genomic: TTCCTGGTGGGGAAACACCTGCAGACCTTGGTCAGGCTTTCAAGgtttgccaca ... ctttctgtagAACCACATGAGCGAAATGTTCGCATACCATGCAACAATGATGTCAAATACC
EST: CAACTATTCCTGGTGGGGAAACACCTGCAGACCTTGGTCAGGCTTTCAAG AACCACATGAGCGAAATGTTCGCATATCATGCAACAATGATGTCAAATACCEST: gi|148934385|gb|EC878415.2|EC878415
genomic: CAACTATTCCTGGTGGGGAAACACCTGCAGACCTTGGTCAGGCTTTCAAGgtttgccaca ... ctttctgtagAACCACATGAGCGAAATGTTCGCATACCATGCAACAATGATGTCAAATACC
EST: TGGTCAGGCTTTCAAG AACCACATGAGCGAAATGTTCGCATACCATGCAACAATGATGTCAAATACCEST: gi|6020916|gb|AW065844.1|AW065844
genomic: TGGTCAGGCTTTCAAGgtttgccaca ... ctttctgtagAACCACATGAGCGAAATGTTCGCATACCATGCAACAATGATGTCAAATACC
EST: CAACTATTCCTGGTGGGGAAACACCTGCAGACCTTGGTCAGGCTTTCAAG AACCACATGAGCGAAATGTTCGCATACCATGCGACAATGATGTCAAATACCEST: gi|78125189|gb|DV543573.1|DV543573
genomic: CAACTATTCCTGGTGGGGAAACACCTGCAGACCTTGGTCAGGCTTTCAAGgtttgccaca ... ctttctgtagAACCACATGAGCGAAATGTTCGCATACCATGCAACAATGATGTCAAATACC
EST: GTGGGGAAACACCTGCAGACCTTGGTCAGGCTTTCAAG AACCACATGAGCGAAATGTTCGCATACCATGCAACAATGATGTCAAATACCEST: gi|14204276|gb|BG837953.1|BG837953
genomic: GTGGGGAAACACCTGCAGACCTTGGTCAGGCTTTCAAGgtttgccaca ... ctttctgtagAACCACATGAGCGAAATGTTCGCATACCATGCAACAATGATGTCAAATACC
EST: CAACTATTCCTGGTGGGGAAACACCTGCAGACCTTGGTCAGGCTTTCAAG AACCACATGAGCGAAATGTTCGCATACCATGCAACAATGATGTCAAATACCEST: gi|211384112|gb|FL133262.1|FL133262
genomic: CAACTATTCCTGGTGGGGAAACACCTGCAGACCTTGGTCAGGCTTTCAAGgtttgccaca ... ctttctgtagAACCACATGAGCGAAATGTTCGCATACCATGCAACAATGATGTCAAATACC
EST: CAACTATTCCTGGTGGGGAAACACCTGCAGACCTTGGTCAGGCTTTCAAG AACCACATGAGCGAAATGTTCGCATACCATGCGACAATGATGTCAAATACC
genomic: CAACTATTCCTGGTGGGGAAACACCTGCAGACCTTGGTCAGGCTTTCAAGgtttgccaca ... ctttctgtagAACCACATGAGCGAAATGTTCGCATACCATGCAACAATGATGTCAAATACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCTTGAAAGCTGTTAAGGTCATGCACACTGTTGCCCTGAGAACCGAGGCAACTATTCCTGGTGGGGAAACACCTGCAGACCTTGGTCAGGCTTTCAAGgtttgccacattcacctcttaagtattcgagaaaaataacattcacctcttcagtttttttccatcatgctgatcttccttttccattttccaaccacatatctttctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG