Sequence
atgc intronic sequence ATGC exonic sequenceAAAGGAGTAGCTCAACAGGAGCATGATTGTATTCCGGATGAACATTATGTGCAGACATTATTTTCTgtaagctttgttgttacttctatagatctcaaagttggaactgtcataattatcacacagattcataatggctggctcattattttaatatatattctag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G152057_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g50040.1 (Oryza sativa), 5'ss of exon 9
AAAGGAGTAGCTCAACAGGAGCATGATTGTATTCCGGATGAACATTATGTGCAGACATTATTTTCTgtaagctttgttgttacttctatagatctcaaagttgga------actgtcataattatcacacagattcataatggctggctcattattttaa-tatatattctag
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AAAGGATCTACTCGAATGGAGCATGATTGCATTCCAGATGAACACTATGTGCAGACATTATTTTCAgtaaggcttgttattgttgatattgatttgcagactgcaggacataatcgtatgttcttcacaacaattcataatgttt--cccattcttttaactttgtag-----
upper sequence: GRMZM2G152057_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA15G11750.1 (Glycine max), 5'ss of exon 8
AAAGGAGTAGCTCAACAGGAGCATGATTGTATTCCGGATGAACATTATGTGCAGACATTATTTTCTgtaagctttgttgttacttctatagatctcaaagttggaactgtcataattatcacacagattcat--aatggctggctcattattttaata-tatattctag------------------------------------------------------------------------------------
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------AAACTTCAGAAGCAGCACAATTGTATTCCAGATGAACACTATGTGCAGACATTGCTTGCAgtaagatactgagacatttat-tccatcattaatctatgttttttggggggattcttcaatcctatttattcgtgcttttgctttattgacaataaaatgttgtcattgatgagcagtaactttttaagggttaatttgcatggatattgtttgtaatcttaatatgcatttctcttctctttatag
upper sequence: GRMZM2G152057_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA09G00910.1 (Glycine max), 5'ss of exon 8
AAAGGAGTAGCTCAACAGGAGCATGATTGTATTCCGGATGAACATTATGTGCAGACATTATTTTCTgtaag---ctttgttgttacttctatagatctca---aagttg---gaactgtcataattatcacacagattcataatggctggctcattattttaatatatattctag-----------------------------------------
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------AAACTTCAGAAGCAGCACAATTGTATTCCAGATGAACACTATGTGCAGACATTGCTTGCAgtaagatactgagacatttattccatcatcattatctatgttttttggggggatgtgttcttcaatcctatttattcttgcttctgctttattcacaaatttgcatggatattgtttgtaatcttaatatgcatttctcttctcttatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67024768|gb|CO453517.1|CO453517EST: AGGAGCATGATTGTATTCCAGATGAACATTATGTGCAGACATTATTTTCT ATCAAAGGACTTGAAGATGAACTGGAGAAAAGAACTTTGACCTATACCTCG
genomic: AGGAGCATGATTGTATTCCGGATGAACATTATGTGCAGACATTATTTTCTgtaagctttg ... tatattctagATCAAAGGACTTGAAGATGAACTGGAGAGAAGAACTTTGACCTATACCTCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAGGAGTAGCTCAACAGGAGCATGATTGTATTCCGGATGAACATTATGTGCAGACATTATTTTCTgtaagctttgttgttacttctatagatctcaaagttggaactgtcataattatcacacagattcataatggctggctcattattttaatatatattctag
- - - - - - - - GGAGCA