Sequence
atgc intronic sequence ATGC exonic sequenceGGCCCACACCACATGCCTGAGACAAGGGGCCTGTGTCTGTCGGAGGAGCAGACTGTGAGCAGTgtaagttcaactcaagctatgaactgaaaagaagctcttaatttcaaactgctcgtattgatttagcatgacagcagatgagaacgacagattctgccgttttgactgttcattatttgtgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G151934_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os03g16090.1 (Oryza sativa), 5'ss of exon 9
GGCCCACACCACATGCCTGAGACAAGGGGCCTGTGTCTGTCGGAGGAGCAGACTGTGAGCAGTgtaagttcaactcaagctatgaactgaaaagaagctcttaatttcaaactgctcgtattgatttagcatgacagcagatgagaacgacagattctgccgttttgactgttcattatttgtgtag
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GGACCGCATCATATGCCTGAAACACGAGGCCTTTGTCTGTCAGAGGAGCAGACTGTGACCAGTgtaagtacaacgca---tgtcaacctaaacagtttttaggatggtacaatttctctaatgaataactaacaaatcaaggaagaccaagtggtaatatgaaatc---------------------
upper sequence: GRMZM2G151934_T02 (Zea mays), 5'ss of exon 9
lower sequence: EFJ07250 (Selaginella moellendorffii), 5'ss of exon 5
GGCCCACACCACATGCCTGAGACAAGGGGCCTGTGTCTGTCGGAGGAGCAGACTGTGAGCAGTgtaagttcaactcaagctatgaactgaaaagaagctcttaatttcaaactgctcgtattgatttagcatgacagcagatgagaacgacagattctgccgttttgactgttcattatttgtgtag
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GGCTACCACCACTTGCCAGAAACAAGGGGCCTCTGCCTGTCGGAGGAGCAGACTGTTAGCACTgtaagtaagtccgaaacctccaacctctggaaagtttctgatggtgcagcgcttcag-------------------------------------------------------------------
upper sequence: GRMZM2G151934_T02 (Zea mays), 5'ss of exon 9
lower sequence: EFJ07867 (Selaginella moellendorffii), 5'ss of exon 5
GGCCCACACCACATGCCTGAGACAAGGGGCCTGTGTCTGTCGGAGGAGCAGACTGTGAGCAGTgtaagttcaactcaagctatgaactgaaaagaagctcttaatttcaaactgctcgtattgatttagcatgacagcagatgagaacgacagattctgccgttttgactgttcattatttgtgtag
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GGCTACCACCACTTGCCAGAAACAAGGGGCCTCTGCCTGTCGGAGGAGCAGACTGTTAGCACTgtaagtaagtccgaaacctccaacctctggaaagtttctgatggtgaagcgctttcag------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211443684|gb|FL398437.1|FL398437EST: GTGTCTGTCGGAGGAACAGACTGTGAGCAGT ATACTTAGGAGGCCCAGGATTGGTGGAAACCGGTTACTGGACATGAGAACT
genomic: GTGTCTGTCGGAGGAGCAGACTGTGAGCAGTgtaagttcaa ... atttgtgtagATACTTAGGAGGCCCAGGATTGGTGGAAACCGGTTACTGGACATGAGAACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCCCACACCACATGCCTGAGACAAGGGGCCTGTGTCTGTCGGAGGAGCAGACTGTGAGCAGTgtaagttcaactcaagctatgaactgaaaagaagctcttaatttcaaactgctcgtattgatttagcatgacagcagatgagaacgacagattctgccgttttgactgttcattatttgtgtag
- - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG