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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGAACCAAAGTACAACGTCGGCAACCGCAACTCTTGGGTTTGATGGAACGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAGgtaaactacatggcgcctgcgctttccgtacgaggctggcgaattgtatgatcactaactttctgtctgctgccgacag

Basic information

species Zea mays
transcript GRMZM2G150484_T02
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89757737|gb|DY687212.1|DY687212
EST:     CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAG                         AACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
genomic: CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAGgtaaactaca ... ctgccgacagAACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
EST: gi|13558515|gb|BG549871.1|BG549871
EST:     CGGTCCCGTCACATTTGGAAGATGGAAACCAGCTTGTTTGTCTTCAGCAG                         AACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
genomic: CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAGgtaaactaca ... ctgccgacagAACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
EST: gi|71774884|gb|DR972762.1|DR972762
EST:     CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAG                         AACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
genomic: CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAGgtaaactaca ... ctgccgacagAACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
EST: gi|76285335|gb|DV024903.1|DV024903
EST:     CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAG                         AACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
genomic: CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAGgtaaactaca ... ctgccgacagAACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
EST: gi|78023748|gb|DV492135.1|DV492135
EST:     CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAG                         AACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
genomic: CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAGgtaaactaca ... ctgccgacagAACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
EST: gi|31357140|gb|CD441497.1|CD441497
EST:     CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAG                         AACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
genomic: CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAGgtaaactaca ... ctgccgacagAACGAGAACCCTGCAATGTGGATGCATGGAGCTGGTTCACGAGGGATGCCC
EST: gi|31356324|gb|CD440681.1|CD440681
EST:     CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAG                         AACGAGAACCCTGCAATGTGGATGCATGGAGCTGG
genomic: CGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAGgtaaactaca ... ctgccgacagAACGAGAACCCTGCAATGTGGATGCATGGAGCTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTGAACCAAAGTACAACGTCGGCAACCGCAACTCTTGGGTTTGATGGAACGGTCCCGTCACATTTGGAAGATGGAAACCAGTTTGTTTGTCTTCAGCAGgtaaactacatggcgcctgcgctttccgtacgaggctggcgaattgtatgatcactaactttctgtctgctgccgacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA