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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTGTTTCCTACTGCGGATGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaataaaaatttatttccttgtgctatgttacattctgctttgcagtgatgtagattttgccccccttattgaacggtaatatcagcccctgtag...

Basic information

species Zea mays
transcript GRMZM2G150251_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150251_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA14G21190.1 (Glycine max), 5'ss of exon 4
CTTCTGTTTCCTACTGCGGATGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaataaaaatttatttccttgtgctatgttacattctgctttgcagtgatgtagattttgccccccttattgaacggtaatatcagcccctgtag--
||| |||| || || || |||  |||| ||||||| || |||||||| |||||||||||||| || ||||||  ||   ||   ||||| |   |||  | |  |  | | |     ||  |  |||   || |        | || |    |  ||  |     | ||   
CTTTTGTTCCCCACCGCAGATTCTGCAAGGCCATTTTCAATGCTTGGACTTGGTGACATTGTTATCCCTGgtaggttg-aatcttttatattgatgtattttcctctaatgttgacagcccttttgtgagttgtaatattaatgtttagtattt-tactacttggtatacat

upper sequence: GRMZM2G150251_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 5'ss of exon 9
CTTCTGTTTCCTACTGCGGATGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttag-taataaaaatttatttccttgtgctatgttacattctgctttgcagtgatgtagattt-tgccccccttattgaacggtaatatcagcccctgtag-
||| |||| || || || |||  ||| |||||||| ||||||||||| ||||||||||||||||| |||||| || |  |  ||||| | ||  |     ||| || ||||  | | | || || | |   |||         |||  ||| |  | | |        | || 
CTTTTGTTCCCAACAGCTGATTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTGgtaaggtgtttgaaattcaattt-taaaaatatctt-cattgggttgtccattgttttctgtttgcagatatattagagaa-gacatttttgaagttgggagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33092200|gb|CF052194.1|CF052194
EST:     TGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GCATTTTTGTTGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTATCAAGA
genomic: TGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaata ... ttgcttgcagGCATTTTTGTTGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTATCAAGA
EST: gi|33093608|gb|CF053602.1|CF053602
EST:     TGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GCATTTTTGTTGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTATCAAGA
genomic: TGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaata ... ttgcttgcagGCATTTTTGTTGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTATCAAGA
EST: gi|78123104|gb|DV541488.1|DV541488
EST:     TGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GCATTTTTGTTGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTATCAAGA
genomic: TGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaata ... ttgcttgcagGCATTTTTGTTGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTATCAAGA
EST: gi|32837706|gb|CD977384.1|CD977384
EST:     TGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GCATTTTTGTTGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTATCAAGA
genomic: TGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaata ... ttgcttgcagGCATTTTTGTTGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTATCAAGA
EST: gi|76282340|gb|DV021908.1|DV021908
EST:     TGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GCATTTTTGTTGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTATCAAGA
genomic: TGATGCACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaata ... ttgcttgcagGCATTTTTGTTGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTATCAAGA